SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
CatBBa_I14033 Version 1 (Component)P(Cat)
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
pLacBBa_K1638000 Version 1 (Component)Lac operator
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AK8pSB1AK8 Version 1 (Component)Eukaryotic terminator vector (formerly BBa_J52017)
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
ScreeningpSB1A10 Version 1 (Component)Screening Plasmid v1.0
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K199049BBa_K199049 Version 1 (Component)pLac+RBS+CAT+TT on pSB1AK3
//rbsrbs Version 1 (Collection) pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
BBa_I715039BBa_I715039 Version 1 (Component)pLac-RBS-RFP
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
pSB1AK3-1pSB1AK3_1 Version 1 (Component)PSB1AK3 with ccdB insert
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BBa_S04224BBa_S04224 Version 1 (Component)CAT+TT on pSB1AK3
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_K199116BBa_K199116 Version 1 (Component)RBS-RFP-TT-pLac-RBS-LuxR-TT
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
BBa_E0430BBa_E0430 Version 1 (Component)EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)