Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_K549021BBa_K549021 Version 1 (Component)pabA with Freiburg-standard in pSB1C3
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
cI lamBBa_R1051 Version 1 (Component)Promoter, Standard (lambda cI regulated)<br>
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K137006BBa_K137006 Version 1 (Component)pabB (from pABA synthesis)
HisBBa_K157011 Version 1 (Component)His affinity tag; Freiburg standard
BBa_K823055BBa_K823055 Version 1 (Component)pSB1C3F-Vector pSB1C3 with RFP-cassette in Freiburg Standard
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
linkerBBa_K157009 Version 1 (Component)Split fluorophore linker; Freiburg standard
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4C1pSB4C1 Version 1 (Component)pCK01 converted into BioBrick vector (formerly BBa_I739202)
BBa_K157012BBa_K157012 Version 1 (Component)Strep affinity tag II; Freiburg standard
pSB1C4pSB1C4 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K648013BBa_K648013 Version 1 (Component)GFP with Standard 25 Prefix/Suffix
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
BBa_K1051004BBa_K1051004 Version 1 (Component)Stop codon free mOrange in RFC[23] standard
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
pSB6C5pSB6C5 Version 1 (Component)pBR322 Derived Chloramphenicol Backbone
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
pSB3C5pSB3C5 Version 1 (Component)Low to medium copy BioBrick standard vector
pabABBa_K137005 Version 1 (Component)pabA (from pABA synthesis)
pSB4C5pSB4C5 Version 1 (Component)Low copy BioBrick standard vector
BBa_K1051002BBa_K1051002 Version 1 (Component)Stop codon free EYFP in RFC[23] standard
BBa_K1351012BBa_K1351012 Version 1 (Component)spaS Subtilin (antimicrobial peptide, Freiburg standard)