Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

BBa_K1051105
BBa_K1051105 Version 1 (Component)
TOM40;targeting peptide to mitochondria outer membrane

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1051108
BBa_K1051108 Version 1 (Component)
targeting peptide to mitochondria outer membrane;Tom20

BBa_K1051106
BBa_K1051106 Version 1 (Component)
targeting peptide to mitochondria outer membrane

BBa_K1051103
BBa_K1051103 Version 1 (Component)
TOM22, targeting peptide to mitochondria outer membrane

BBa_K1051107
BBa_K1051107 Version 1 (Component)
Tom70;targeting peptide to mitochondria outer membrane

BBa_K1051104
BBa_K1051104 Version 1 (Component)
VDAC1;targeting peptide to mitochondria outer membrane

BBa_I746200
BBa_I746200 Version 1 (Component)
FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

oprF
BBa_K1172501 Version 1 (Component)
Outer membrane porin OprF from Pseudomonas fluorescens

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BBa_K1051102
BBa_K1051102 Version 1 (Component)
targeting peptide to mitochondria inner membrane

BBa_K1051100
BBa_K1051100 Version 1 (Component)
targeting peptide to mitochondria inner membrane

BBa_J36837
BBa_J36837 Version 1 (Component)
Outer membrane protein A, aa 46-159

BBa_K1051101
BBa_K1051101 Version 1 (Component)
Cox4 targeting peptide to mitochondria inner membrane

SPtom40
BBa_K809204 Version 1 (Component)
signal peptide of Tom40

BBa_K1462080
BBa_K1462080 Version 1 (Component)
TOM22

BBa_J36836
BBa_J36836 Version 1 (Component)
Outer membrane protein A, aa 46-66

BBa_I746009
BBa_I746009 Version 1 (Component)
AIP generator + outer membrane permeability

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

SPtom22
BBa_K809206 Version 1 (Component)
signal peptide of Tom22

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K1051109
BBa_K1051109 Version 1 (Component)
targeting peptide to mitochondria matrix;MIA40

mtGFP
BBa_K809001 Version 1 (Component)
Mitochondrial GFP

BBa_J36835
BBa_J36835 Version 1 (Component)
Lipoprotein signal peptide

BBa_M1028
BBa_M1028 Version 1 (Component)
tolC-Outer membrane protein

BBa_K1811333
BBa_K1811333 Version 1 (Component)
CUP1 metallothionein fused to LamB on outer membrane

BBa_K331008
BBa_K331008 Version 1 (Component)
Outer Membrane Protein OmpA

BBa_K2045000
BBa_K2045000 Version 1 (Component)
FhuA-GBP:Ferrichrome Iron outer membrane transporter-gold binding peptide

BBa_K1051036
BBa_K1051036 Version 1 (Component)
BBa_K1051105(non stop codon to Mitochondria Outer Membrane)+BBa_K1051008( CAA terminator with stopco

BBa_K1393003
BBa_K1393003 Version 1 (Component)
outer membrane porin protein C from Escherichia coli BL21(DE3)

myristoila
BBa_I712026 Version 1 (Component)
myristoilation signal sequence; anchors protein to membrane