iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_J85600BBa_J85600 Version 1 (Component)attB1 recombination site
BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_I15009BBa_I15009 Version 1 (Component)phycocyanobilin:ferredoxin oxidoreductase (PcyA) from synechocystis
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
BBa_K1424000BBa_K1424000 Version 1 (Component)Prefix homologous recombination for Synechocystis ("Left flank")
FurBO_11498 Version 1 (Component) BBa_K906201BBa_K906201 Version 1 (Component)Psl2131 (for Synechocystis homologous recombination)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
RS1BBa_K743000 Version 1 (Component)Synechocystis PCC6803 neutral recombination site.
BBa_K1424001BBa_K1424001 Version 1 (Component)Suffix homologous recombination for Synechocystis ("Right flank")
RS2BBa_K743001 Version 1 (Component)Synechocystis PCC6803 neutral recombination site.
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K1945001BBa_K1945001 Version 1 (Component)Homologous Recombination Plasmid for Synechocystis sp. PCC 6803
BBa_K1424003BBa_K1424003 Version 1 (Component)Kanamycin resistance for Synechocystis
BBa_K1945002BBa_K1945002 Version 1 (Component)Homologous Recombination Intermediate for Counter-selection in Synechocystis sp. PCC 6803
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
psb1C3_intBBa_K743006 Version 1 (Component)psb1C3_IntK recombination plasmid for Synechocystis PCC6803
psb1C3_intBBa_K743007 Version 1 (Component)psb1C3_IntKR recombination plasmid for Synechocystis PCC6803
psb1C3_intBBa_K743008 Version 1 (Component)psb1C3_IntKR recombination plasmid for Synechocystis PCC6803
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
Homol.BBa_I13850 Version 1 (Component)E coli Downstream Homologous Recombination Sequence
Homol.BBa_I13851 Version 1 (Component)E coli Upstream Homologous Recombination Sequence
BBa_K1945003BBa_K1945003 Version 1 (Component)PT7 + Luciferase in Homologous Recombination Plasmid
BBa_K906006BBa_K906006 Version 1 (Component)Extended psbA2 for Synechocystis
BBa_K1861301BBa_K1861301 Version 1 (Component)Homologous recombination site 1 and TALE3 binding site
BBa_K1861304BBa_K1861304 Version 1 (Component)Homologous recombination site 2 and TALE3 binding site
BBa_K863204BBa_K863204 Version 1 (Component)shuttle vector pECPP11JS for recombination of genes of interest in yeast
mCherryBBa_J06505 Version 1 (Component)monomeric RFP optimized for bacteria
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
BBa_K390001BBa_K390001 Version 1 (Component)5'UTR and native RBS from psbA2 in Synechocystis sp. PCC 6803
BBa_K390002BBa_K390002 Version 1 (Component)5'UTR and consensus RBS from psbA2 in Synechocystis sp. PCC 6803