iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
tEno2BBa_K1829003 Version 1 (Component)tEno2: Yeast terminator
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
Cse1BBa_K1218003 Version 1 (Component)CRISPR CasA E. coli (Modern)
BBa_K1820003BBa_K1820003 Version 1 (Component)P335-Φ31phage genetic switch-divergent promoter + native RBS
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1820023BBa_K1820023 Version 1 (Component)FspI + terminator
BBa_K2180003BBa_K2180003 Version 1 (Component)Sucrose Operator - DegU Binding Site
BBa_K2184003BBa_K2184003 Version 1 (Component)Guid RNA for NaCl & Sour flavor
BBa_K2187003BBa_K2187003 Version 1 (Component)Chlorogenate Esterase gene
BBa_K2182001BBa_K2182001 Version 1 (Component)His Tagged NOX
BBa_K2182004BBa_K2182004 Version 1 (Component)RBS for BBa_K2182003
FurBO_11498 Version 1 (Component) pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
BBa_K2182003BBa_K2182003 Version 1 (Component)Translational Unit for His-tagged NOX
BBa_K1682003BBa_K1682003 Version 1 (Component)<i>P<sub>kdpF</sub>[-15, T>C]</i>
BBa_K2082003BBa_K2082003 Version 1 (Component)Split CFP Bimolecular fluorescence complementation (BiFC) with GFP
BBa_K2182000BBa_K2182000 Version 1 (Component)S. sanguinis H2O forming NADPH Dehydrogenase
BBa_K2172003BBa_K2172003 Version 1 (Component)Terminator from pGEX-KG vector
BBa_K2132003BBa_K2132003 Version 1 (Component)mCherry-SpyTag
BBa_K2182005BBa_K2182005 Version 1 (Component)RBS for BBa_K2182002
BBa_K2152003BBa_K2152003 Version 1 (Component)Bacteriophage Phi X 174 lysis gene E(wild type)
BBa_K212003BBa_K212003 Version 1 (Component)pAgr (S. epidermidis agr operon promoter)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K1212003BBa_K1212003 Version 1 (Component)TALe Binding Site 1 (specific to TAL repressor 1)
BBa_K182003BBa_K182003 Version 1 (Component)Intermediate part consisting of CI promoter followed by tetR, LacI and Tet Operator
BBa_K2185003BBa_K2185003 Version 1 (Component)Penicillium alpha amylase w/ no promoter
BBa_K1185003BBa_K1185003 Version 1 (Component)Integration vector for Bacillus subtilis derived from pSac-Cm
BBa_K1882003BBa_K1882003 Version 1 (Component)Saccharose Transporter
BBa_K218003BBa_K218003 Version 1 (Component)LuxOU from Vibrio harveyi followed by terminator
BBa_K2182002BBa_K2182002 Version 1 (Component)Expression for Proteorhodopsin and BLH
BBa_K1152003BBa_K1152003 Version 1 (Component)TycC6 Module from Tyrocidine
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
BBa_K1826003BBa_K1826003 Version 1 (Component)Bactofencin A under the regulation of arabinose promoter