Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_I716055BBa_I716055 Version 1 (Component)AHSP in 9145(biobricks 2.0 format)
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_I716053BBa_I716053 Version 1 (Component)alpha HbA in 9145(biobricks 2.0 format)
BBa_I716054BBa_I716054 Version 1 (Component)beta HbA in 9145(biobricks 2.0 format)
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_I13452BBa_I13452 Version 1 (Component)Adds another BioBrick site
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
BBa_K112305BBa_K112305 Version 1 (Component){rbs.lambda lysozyme!} in BBb format
BBa_I716379BBa_I716379 Version 1 (Component)Biobricked Mutant Hemoglobin Cassette in petDUET format with hemABCD with AHSP
BBa_I716378BBa_I716378 Version 1 (Component)Biobricked Unmodified Hemoglobin Cassette in petDUET format with hemABCD with AHSP
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
BBa_K809605BBa_K809605 Version 1 (Component)Lambda Holin in BBa format
BBa_I716256BBa_I716256 Version 1 (Component)RBS (pBca 9145 ??? Bca1090) + AHSP gene
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
HSPBBa_K338001 Version 1 (Component)Heat Shock Promoter (HSP)
BBa_I716356BBa_I716356 Version 1 (Component)Biobricked Mutant Hemoglobin Cassette in petDUET format
BBa_K873002BBa_K873002 Version 1 (Component)HSP promoter
BBa_K112311BBa_K112311 Version 1 (Component){rbs.lambda holin!} in BBb format
BBa_K112317BBa_K112317 Version 1 (Component){rbs.lambda antiholin!} in BBb format
PrefixBBa_G00000 Version 1 (Component)BioBrick cloning site prefix
BBa_K1824890BBa_K1824890 Version 1 (Component)The Sequence of the SpeI/XbaI scar in BioBricks standard assembly.
BBa_I716354BBa_I716354 Version 1 (Component)Biobricked Unmodified Hemoglobin Cassette in petDUET format
SuffixBBa_G00001 Version 1 (Component)BioBrick cloning site suffix
BBa_M11201BBa_M11201 Version 1 (Component)pRS316 plasmid for S. cerevisiae in BioBrick format
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_I716374BBa_I716374 Version 1 (Component)Biobricked Unmodified Hemoglobin Cassette in petDUET format with hemABCD
BBa_I716375BBa_I716375 Version 1 (Component)Biobricked Mutant Hemoglobin Cassette in petDUET format with hemABCD
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_I716376BBa_I716376 Version 1 (Component)Biobricked Hemoglobin Cassette in petDUET format with hemABCD with cytochromes
BBa_K1321351BBa_K1321351 Version 1 (Component)CBDcenA with linker fused to NiBP in Freiburg format (RFC 25)
BBa_K1114005BBa_K1114005 Version 1 (Component)The MoClo format of BBa_J23104 with AB fusion sites.
Lin-2BO_9115 Version 1 (Component) BBa_J72089BBa_J72089 Version 1 (Component){rbs.c1} in BglBrick Format
BBa_I716377BBa_I716377 Version 1 (Component)Biobricked Mutant Hemoglobin Cassette in petDUET format with hemABCD with cytochromes
BBa_I716380BBa_I716380 Version 1 (Component)Biobricked Unmodified Hemoglobin Cassette in petDUET format with hemABCD with antioxidants
BBa_I716381BBa_I716381 Version 1 (Component)Biobricked Mutant Hemoglobin Cassette in petDUET format with hemABCD with antioxidants
BBa_K112322BBa_K112322 Version 1 (Component){Pdps} in BBb format