iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_K1020012BBa_K1020012 Version 1 (Component)Alkane Selector for intracellular alkane production
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1020011BBa_K1020011 Version 1 (Component)High expressed Alkane Selector for intracellular alkane production
FurBO_11498 Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_M36710BBa_M36710 Version 1 (Component)alkB1 (alkane-1-monooxygenase)
BBa_K1020005BBa_K1020005 Version 1 (Component)Alkane Marker--Device for detection of various alkanes
BBa_K1020002BBa_K1020002 Version 1 (Component)alkane regulatory protein ALKR
BBa_J61032BBa_J61032 Version 1 (Component)Alkaline phosphatase [phoA]
ladABBa_K398000 Version 1 (Component)Long-Chain Alkane Monooxygenase
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
Syn_FuelBBa_K610000 Version 1 (Component)alkane synthesis
BBa_K1020004BBa_K1020004 Version 1 (Component)Biosensor for alkane detection
BBa_K1020008BBa_K1020008 Version 1 (Component)alkane producing module
BBa_K398014BBa_K398014 Version 1 (Component)Alkane Hydroxylase System
BBa_M36240BBa_M36240 Version 1 (Component)alkane-activated ranscription factor for alkB promoter
BBa_M36252BBa_M36252 Version 1 (Component)Alkane Sensor Part
alkB2BBa_K398001 Version 1 (Component)Medium-chain alkane 1-monooxygenase (Gordonia sp. TF6)
BBa_M36719BBa_M36719 Version 1 (Component)medium-chain alkane hydroxylating device
BBa_K784027BBa_K784027 Version 1 (Component)XhoI+RBS+Alkaline Phosphatase (phoA) +XmaI
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_M36725BBa_M36725 Version 1 (Component)short-chain alkane hydroxylating device (mmoXYBZDC)
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K1350003BBa_K1350003 Version 1 (Component)Alkaline Cellulase
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BBa_K248000BBa_K248000 Version 1 (Component)phoA (alkaline phosphatase) promoter
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
PgadBBa_K559011 Version 1 (Component)Pgad - Intracellular Chloride-Sensing Cassette
BBa_K553003BBa_K553003 Version 1 (Component)constitutive production of LasR trans-activator
alkABO_2695 Version 1 (Component) BBa_K1470004BBa_K1470004 Version 1 (Component)Secreted Alkaline Phosphatase (SEAP)
BBa_K826000BBa_K826000 Version 1 (Component)cytochrome which catalyzes the terminal oxidation of alkanes
AlkABO_11322 Version 1 (Component) alkABO_30765 Version 1 (Component) fhlABBa_K778001 Version 1 (Component)fhlA: a transcriptional activator for enhanced hydrogen production
BBa_J07005BBa_J07005 Version 1 (Component)PhoA (E.coli JM83 alkaline phosphatase gene)