SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Scar25 ATG
BBa_K1319106 Version 1 (Component)
RFC 25 Translation Start Scar Sequence

BBa_K809601
BBa_K809601 Version 1 (Component)
GAL promoter (kozak) without start codon ATG

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_I716210
BBa_I716210 Version 1 (Component)
BamHI endonuclease without start codon

BBa_K284031
BBa_K284031 Version 1 (Component)
Cre Recombinase without start codon

cre
BBa_K112102 Version 1 (Component)
Cre enzyme without start or stop codons

BBa_K2066518
BBa_K2066518 Version 1 (Component)
mCherry (with start codon)

BBa_K112100
BBa_K112100 Version 1 (Component)
Cre enzyme without start codon

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

BBa_K1583059
BBa_K1583059 Version 1 (Component)
His-tag without start codon

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

BBa_K112113
BBa_K112113 Version 1 (Component)
Ligase without start or stop codons

BBa_K112108
BBa_K112108 Version 1 (Component)
BglII endonuclease without start or stop codons

dCas 9
BBa_K1051800 Version 1 (Component)
protein dCas9.Two mutations,D10A and H841A,from Cas9 gene without stop codon.

BBa_J36841
BBa_J36841 Version 1 (Component)
Streptavidin, wild-type core + His6 tag (no start codon)

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

BBa_K112105
BBa_K112105 Version 1 (Component)
BamHI endonuclease without start or stop codons

T7rnap
BBa_I716103 Version 1 (Component)
T7rnap (T7 RNA Polymerase) - ATG Start Codon

T7start
BBa_J18912 Version 1 (Component)
T7 promoter + RBS + START

BBa_K1085001
BBa_K1085001 Version 1 (Component)
RBS Start-codon SpiderSilkSubunitE1

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

BBa_K1332002
BBa_K1332002 Version 1 (Component)
Histidine tag (8 AA) and RFP (without stop codon)

BBa_K1582030
BBa_K1582030 Version 1 (Component)
mTagBFP without stop codon

BBa_K1582037
BBa_K1582037 Version 1 (Component)
LC without stop codon

BBa_K1582039
BBa_K1582039 Version 1 (Component)
Thc_Cut1 without stop codon

BBa_K1582038
BBa_K1582038 Version 1 (Component)
FsC without stop codon

BBa_K112101
BBa_K112101 Version 1 (Component)
Cre enzyme without stop codon

BBa_K112112
BBa_K112112 Version 1 (Component)
Ligase with a start codon without a stop codon

BBa_M36009
BBa_M36009 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

BBa_M36282
BBa_M36282 Version 1 (Component)
5' Bicistronic UTR, includes ATG start codon

BBa_K112111
BBa_K112111 Version 1 (Component)
Ligase without a start with a stop codon.

MGSS
BBa_K1362445 Version 1 (Component)
Start codon and GSS spacer

MGSS
BBa_K1362446 Version 1 (Component)
Start codon and GSS spacer

Holin, T4
BBa_K112003 Version 1 (Component)
T4 holin, without start or stop codon, berkeley standard

BBa_J36843
BBa_J36843 Version 1 (Component)
Streptavidin, single-chain dimer + His6 tag (no start codon)

BBa_K844006
BBa_K844006 Version 1 (Component)
Spider Silk 1x Subunit "W" with Met (ATG) start codon

BBa_K641006
BBa_K641006 Version 1 (Component)
LambdaRep (no start codon)

BBa_K322123
BBa_K322123 Version 1 (Component)
Phycobilin synthesis operon without terminator

BBa_K1601000
BBa_K1601000 Version 1 (Component)
Cytochrome C S.oneidensis without stop codon

BBa_I716213
BBa_I716213 Version 1 (Component)
Cre (TTG start)