Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
FurBO_11498 Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
FadRBO_11470 Version 1 (Component) BBa_K1076001BBa_K1076001 Version 1 (Component)Flanking genes for FadR deletion
PfadRBBa_K861060 Version 1 (Component)PfadR, synthetic promoter with tandem FadR binding site
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_K861047BBa_K861047 Version 1 (Component)PfadR regulated FadI and FadJ
BBa_K861046BBa_K861046 Version 1 (Component)PfadR regulated FadA and FadB
BBa_B0029BBa_B0029 Version 1 (Component)1 bp deletion from B0031
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K861030BBa_K861030 Version 1 (Component)FadB, gene for fatty acid degradation from E.coli K12
BBa_K861048BBa_K861048 Version 1 (Component)PfadR regulated S-FadA and S-FadB
BBa_K861042BBa_K861042 Version 1 (Component)FadA, gene for fatty acid degradation from <i>Salmonella enterica</i> LT2
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K861062BBa_K861062 Version 1 (Component)PfadR with FadR overexpressed
BBa_K861031BBa_K861031 Version 1 (Component)FadJ, gene for fatty acid degradation from <i>E.coli str. K12</i>
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
fapRBO_31001 Version 1 (Component) BBa_K861028BBa_K861028 Version 1 (Component)PfadR regulated FadE
FadABBa_K861400 Version 1 (Component)FadA protein coding sequence for fatty acid degradation
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
BBa_K861349BBa_K861349 Version 1 (Component)PfadR with FadA, intermediate part for BBa_K861046
BBa_K861350BBa_K861350 Version 1 (Component)PfadR with FadI, intermediate part for BBa_K861047
BBa_K861003BBa_K861003 Version 1 (Component)PfadR regulated FadL
BBa_K861016BBa_K861016 Version 1 (Component)PfadR regulated FadD
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
BBa_K817007BBa_K817007 Version 1 (Component)plac-RBS-FadR
BBa_K861351BBa_K861351 Version 1 (Component)PfadR with S-FadA, intermediate part for BBa_K861048
BBa_K861029BBa_K861029 Version 1 (Component)PfadR regulated S-FadE
BBa_K1472602BBa_K1472602 Version 1 (Component)fadL, fadD protein generator
mRFP sel.BBa_K1362422 Version 1 (Component)mRFP selection marker with outward BsaI restriction sites