iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_M45013BBa_M45013 Version 1 (Component)Modified <i>hly</i> for listeriolysin O production
Prm +BBa_I12007 Version 1 (Component)Modified lambda Prm promoter (OR-3 obliterated)
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
FurBO_11498 Version 1 (Component) BBa_K531006BBa_K531006 Version 1 (Component)Optimized esp gene for <i>C. crescentus</i>
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K177026BBa_K177026 Version 1 (Component)listeriolysin O 399G->C - locus from Listeria monocytogenes
BBa_K733010BBa_K733010 Version 1 (Component)<i>Ptms</i>+RBS+<i>ydcD</i>.
BBa_K733013BBa_K733013 Version 1 (Component)<i>Pveg</i>+R.B.S.
BBa_K733006BBa_K733006 Version 1 (Component)<i>ydjM</i>+<i>Bmp2</i>
BBa_K733001BBa_K733001 Version 1 (Component)<i>Ptms</i> - a constitutive promoter in <i>E. coli</i> and <i>B. subtilis</i>.
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_K733012BBa_K733012 Version 1 (Component)<i>xylR</i>+<i>PxylA</i>+RBS+<i>ydcE</i>+<i>Ptms</i>+RBS+<i>ydcD</i>: Cell Growth Inhibition Device
BBa_K733014BBa_K733014 Version 1 (Component)<i>Pveg</i>+RBS+<i>ydjM</i>+<i>Bmp2</i>
phlFBBa_K1725040 Version 1 (Component)<i>phlF</i> encoding PhlF repressor from Pseudomonas protegens Pf-5
p_qrr4BBa_K131017 Version 1 (Component)p_qrr4 from <I>Vibrio harveyi</I>
BBa_K733018BBa_K733018 Version 1 (Component)<i>xylR</i>+<i>PxylA</i>+RBS+GFP+Double Terminator
BBa_K733002BBa_K733002 Version 1 (Component)<i>xylR</i>+<i>PxylA</i>: A xylose inducible promoter with its transcriptional regulator.
BBa_K531007BBa_K531007 Version 1 (Component)P<sub>rsaA</sub> constitutive promoter, <i>esp</i> optimized for <i>Caulobacter</i>, and <i>rsaA</i>
BBa_K1638003BBa_K1638003 Version 1 (Component)T25 domain of <i>cyaA</i> from <i>Bordetella pertussis</i> (IPTG inducible)
BBa_K733016BBa_K733016 Version 1 (Component)<i>Pveg</i>+RBS+<i>ydjM</i>+<i>Bmp2</i>+terminator
BBa_K733017BBa_K733017 Version 1 (Component)<i>Pveg</i>+RBS+<i>ybdN</i>+<i>Bmp2</i>+terminator
BBa_K602000BBa_K602000 Version 1 (Component)<i>Deinococcus radiodurans</i> PprI
PphoABBa_K1139200 Version 1 (Component)<i>phoA</i> promoter
BBa_K1315001BBa_K1315001 Version 1 (Component)The <i>pqsA</i> promoter from <i>Pseudomonas</i>
BBa_K602001BBa_K602001 Version 1 (Component)<i>Deinococcus radiodurans</i> PprA
BBa_K223025BBa_K223025 Version 1 (Component)HlyR + HlyC + Hly B + Hly D
BBa_K1315008BBa_K1315008 Version 1 (Component)The <i>cblD</i> promoter from <i>Burkholderia</i>
BBa_K325210BBa_K325210 Version 1 (Component)Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>
BBa_K1315005BBa_K1315005 Version 1 (Component)The <i>clp</i> gene from <i>Xanthomonas campestris</i>
BBa_K1315003BBa_K1315003 Version 1 (Component)The <i>rpfG</i> gene from <i>Xanthomonas campestris</i>
BBa_K861042BBa_K861042 Version 1 (Component)FadA, gene for fatty acid degradation from <i>Salmonella enterica</i> LT2
BBa_K1315006BBa_K1315006 Version 1 (Component)The <i>manA</i> promoter from <i>Xanthomonas campestris</i>
BBa_K531001BBa_K531001 Version 1 (Component)<i>C. crescentus</i> S-layer RsaA C-term
BBa_K823001BBa_K823001 Version 1 (Component)P<sub><i>liaI</i></sub> promoter of <i>Bacillus subtilis</i>
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_K733009BBa_K733009 Version 1 (Component)<i>Ptms</i>+BBa_E0240: <i>Ptms</i>+RBS+GFP+Double
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K223030BBa_K223030 Version 1 (Component)RBS + TolC+ HlyR + HlyC + HlyB + HlyD
BBa_K1813015BBa_K1813015 Version 1 (Component)<i>nicD</i> Expression Casette