Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
mChBBa_J176005 Version 1 (Component)mCh
ATGATG Version 1 (Component) fshPCDBBa_J176002 Version 1 (Component)fshPCD
BBa_J70594BBa_J70594 Version 1 (Component)RFC12 TAATAA Tail Domain
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
VP64BBa_J176013 Version 1 (Component)VP64
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
PLflexBBa_J176040 Version 1 (Component)PLflex
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_J70621BBa_J70621 Version 1 (Component)RFC12 7x His Tag Tail Domain
BBa_J70609BBa_J70609 Version 1 (Component)RFC12 7x His Tag Head Domain
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K1462503BBa_K1462503 Version 1 (Component)SH3 domain + Linker
BBa_J70623BBa_J70623 Version 1 (Component)RFC12 cMyc Tag Tail Domain
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
HABBa_I712008 Version 1 (Component)HA affinity tag
NLSBBa_J176008 Version 1 (Component)NLS
7xHisBBa_T2002 Version 1 (Component)7x His tag special internal domain
BBa_K165006BBa_K165006 Version 1 (Component)Zif268-HIV DNA-binding domain
BBa_K300002BBa_K300002 Version 1 (Component)Phasin (PhaP) - head domain
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
TALBBa_K1033000 Version 1 (Component)Tyrosine ammonia-lyase (TAL) with RBS
Fok_aBBa_K243000 Version 1 (Component)Protein domain (active) of the restriction endonuclease FokI
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
RFC105 CCBBa_K1362419 Version 1 (Component)C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC
Gal4DBBBa_J176020 Version 1 (Component)Gal4 DB
preSCsiteBBa_J18919 Version 1 (Component)preScission protease cleavage site (E. coli-optimized)
BBa_K1462502BBa_K1462502 Version 1 (Component)PDZ domain + Linker
SPzim17BBa_K809201 Version 1 (Component)signal peptide of ZIM17
mCherryBBa_K165004 Version 1 (Component)mCherry, yeast optimized for fusion
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
BBa_K747095BBa_K747095 Version 1 (Component)TAL-Protein_TT6_Direpeat
BBa_K747094BBa_K747094 Version 1 (Component)TAL-Protein_TG6_Direpeat
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece