Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

ECFP
BBa_E0022 Version 1 (Component)
enhanced cyan fluorescent protein derived from A. victoria GFP

BBa_I3600
BBa_I3600 Version 1 (Component)
Test: Chemotaxis response to secreted aspartate, sender cells (I3100.I3200.E0422)

BBa_I3421
BBa_I3421 Version 1 (Component)
Test: Switch response to aspartate input (I3410.E0422.I3411.E0432.I3100.I3400.I3300.I3400.I3102.I340

BBa_I3425
BBa_I3425 Version 1 (Component)
Test: Switch aspartate excretion (I3410.I3200.I3411.E0432.I3100.I3400.I3101.I3400.I3102.I3401)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_E0420
BBa_E0420 Version 1 (Component)
ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)

BBa_I3423
BBa_I3423 Version 1 (Component)
Test: Switch response to aspartate input (I3410.E0422.I3411.E0432.I3100.I3400.I3302.I3400.I3102.I340

BBa_I3422
BBa_I3422 Version 1 (Component)
Test: Switch response to aspartate input (I3410.E0422.I3411.E0432.I3100.I3400.I3301.I3400.I3102.I340

BBa_I3424
BBa_I3424 Version 1 (Component)
Test: Switch response to quorum (I3410.E0422.I3411.E0432.I3100.I3400.I3101.I3400.I3510.I3401)

BBa_E0422
BBa_E0422 Version 1 (Component)
ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)

BBa_I3420
BBa_I3420 Version 1 (Component)
Test: Switch functionality and bistability (I3410.E0422.I3411.E0432.I3100.I3400.I3101.I3400.I3102.I3

BBa_I3601
BBa_I3601 Version 1 (Component)
Test: Chemotaxis response to secreted aspartate, receiver cells (R1075.E0432)

BBa_I3521
BBa_I3521 Version 1 (Component)
Test: Quorum threshold level and chemotaxis response, sender cells (I3600.I3520.I3500)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I3000
BBa_I3000 Version 1 (Component)
E. colibrator design 1, Polkadorks (I3410.I3200.E0422.I3510.I3401.I3411.B0015.I3100.I3400.I3300.I340

BBa_I3002
BBa_I3002 Version 1 (Component)
E. colibrator design 3, Polkadorks (I3410.I3200.E0422.I3510.I3401.I3411.I0460.I3100.I3400.I3300.I340

BBa_I3210
BBa_I3210 Version 1 (Component)
Test: AspA attractant sender (I3100.I3200.B0015)

BBa_I3001
BBa_I3001 Version 1 (Component)
E. colibrator design 2, Polkadorks (I3410.I3200.E0422.I3510.I3401.I3411.B0015.I3100.I3701.I3300.I370

cheZ
BBa_K629003 Version 1 (Component)
cheZ, chemotaxis regulator, protein phosphatase for CheY

BBa_I3110
BBa_I3110 Version 1 (Component)
Test: Lac trigger (I3100.E0422)

BBa_I3522
BBa_I3522 Version 1 (Component)
Test: Quorum threshold level and chemotaxis response, receiver cells (I3601.I3520.I3500)

BBa_K216005
BBa_K216005 Version 1 (Component)
PyeaR promoter, responsive to nitrate, nitrite and nitric oxide

BBa_E0432
BBa_E0432 Version 1 (Component)
EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)

BBa_F1610
BBa_F1610 Version 1 (Component)
3OC₆HSL Sender Device

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_I3310
BBa_I3310 Version 1 (Component)
Test: Tar-EnvZ attractant receiver (I3300.E0422)

BBa_S01004
BBa_S01004 Version 1 (Component)
E0432.R0062.E0422

aspA
BBa_C0083 Version 1 (Component)
aspartate ammonia-lyase

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

PEST
BBa_J176018 Version 1 (Component)
PEST

BBa_I3112
BBa_I3112 Version 1 (Component)
Test: AraC trigger (I3102.E0422)

BBa_I3111
BBa_I3111 Version 1 (Component)
Test: TetR trigger (I3101.E0422)

BBa_I3100
BBa_I3100 Version 1 (Component)
Lac stochastic trigger device (R1075.B0034.C0012.B0015.R0010)

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane