Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
GFP reportBBa_E0240 Version 1 (Component)GFP generator
EcoRIEcoRI Version 1 (Component) cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_M36992BBa_M36992 Version 1 (Component)Type II Secreted Antifreeze Actuator in E.coli (10-Repeat)
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_M36993BBa_M36993 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (10-Repeat)
lasrBBa_C0079 Version 1 (Component)lasR activator from P. aeruginosa PAO1(+LVA)
BBa_M36994BBa_M36994 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (1-Repeat)
BBa_M36991BBa_M36991 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (1-Repeat)
BBa_M36990BBa_M36990 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (5-Repeat)
BBa_M36995BBa_M36995 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (5-Repeat)
BBa_M36983BBa_M36983 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (5-Repeat) Correct
BBa_M36982BBa_M36982 Version 1 (Component)Type II Secreted Antifreeze Actuator in E. coli (1-Repeat) Correct
lasRBBa_C0179 Version 1 (Component)lasR activator from P. aeruginosa PAO1(no LVA)
const.BBa_R1075 Version 1 (Component)Constitutive Promoter II
rhlRBBa_C0071 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)
BBa_I746352BBa_I746352 Version 1 (Component)delta activator from phiR73 phage
cinrBBa_C0077 Version 1 (Component)cinR activator from Rhizobium leguminosarum (+LVA)
BBa_M36726BBa_M36726 Version 1 (Component)Type II Signal Peptide
rhIRBBa_C0171 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)
BBa_M36996BBa_M36996 Version 1 (Component)Non-Glycolated Antifreeze Protein (AFP) - 10-Repeated Segment
BBa_E0044BBa_E0044 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212)
BBa_K1445001BBa_K1445001 Version 1 (Component)Endogenous Type II CRISPR-Cas9 phagemid
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
BBa_I746350BBa_I746350 Version 1 (Component)ogr activator from P2 phage
BBa_K1159000BBa_K1159000 Version 1 (Component)Erythromycin Esterase Type II (EreB) in RFC[25]
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
MccSBBa_K1659100 Version 1 (Component)Microcin S, a Class II microcin produced by probiotic E. coli G3/10
UNIK AntifBBa_K1825000 Version 1 (Component)UNIK antifreeze protein
BBa_M36981BBa_M36981 Version 1 (Component)Type II Signal Peptide (Correct)
BBa_B1010BBa_B1010 Version 1 (Component)Terninator (artificial, large, %T~<10)
cI857BBa_J06503 Version 1 (Component)Lambda cI857 (Lambda II) (RBS- LVA+)
AntiFreezeBBa_K193200 Version 1 (Component)TmTHP is one of Anti-Freeze Protein
BBa_M1540BBa_M1540 Version 1 (Component)YL2 - antifreeze protein - II
BBa_K137042BBa_K137042 Version 1 (Component)Regulatory SSM device: Promoter with (TA)10 repeat expressing GFP
BBa_K553020BBa_K553020 Version 1 (Component)Mammaliam Secreted Beta Lactamase
BBa_M36997BBa_M36997 Version 1 (Component)Non-Glycolated Antifreeze Protein (AFP) - 1-Repeated Segment
BBa_M36999BBa_M36999 Version 1 (Component)Non-Glycolated Antifreeze Protein (AFP) - 5-Repeated Segment