Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1316011
BBa_K1316011 Version 1 (Component)
pFAB640 regulating the ccmAH cluster

BBa_K1316010
BBa_K1316010 Version 1 (Component)
pFAB640

BBa_K917006
BBa_K917006 Version 1 (Component)
E. coli cytochrome maturation gene cluster ccmA-H

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_K917013
BBa_K917013 Version 1 (Component)
pLac promoter plus cytochrome maturation gene cluster ccmA-H

bbc1
BBa_K398108 Version 1 (Component)
Salt tolerance cluster

rib-synth
BBa_K1172303 Version 1 (Component)
Riboflavin synthesis gene cluster from shewanella oneidensis

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

mdnD
BBa_K627004 Version 1 (Component)
N-acetyltransferase from the mdn-cluster

mdnE
BBa_K627005 Version 1 (Component)
ABC transporter from the mdn-cluster

BBa_M36405
BBa_M36405 Version 1 (Component)
Bicistronic RBS (medium) pFAB1646

BBa_K1758120
BBa_K1758120 Version 1 (Component)
RNase E regulating protein RraA

BBa_K302017
BBa_K302017 Version 1 (Component)
spaIFEG cluster

BBa_K641026
BBa_K641026 Version 1 (Component)
P(ccmABH) - Stress Promoter

BBa_K2088692
BBa_K2088692 Version 1 (Component)
gene cluster mhbDHIM

BBa_M30109
BBa_M30109 Version 1 (Component)
Light responsive system, dual regulation

mdnC
BBa_K627003 Version 1 (Component)
ATP-grasp-type ligase from the mdn-cluster

BBa_K1355001
BBa_K1355001 Version 1 (Component)
Regulation and transport of mercury ions

BBa_K302022
BBa_K302022 Version 1 (Component)
spaBTC cluster

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

araC-CysEm
BBa_K731030 Version 1 (Component)
Inducible araC-pBAD promoter regulating M256I CysE

BBa_K1112002
BBa_K1112002 Version 1 (Component)
Cluster PHA

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

406
BBa_K398406 Version 1 (Component)
Solvent tolerance cluster

araC-CysE
BBa_K731020 Version 1 (Component)
Inducible araC-pBAD promoter regulating WT CysE