iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_K316003BBa_K316003 Version 1 (Component)XylE - catechol 2,3-dioxygenase from P.putida with terminator
BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_K331021BBa_K331021 Version 1 (Component)Catechol 2,3 Dioxygenase with Fusion Suffix
BBa_K808033BBa_K808033 Version 1 (Component)araC-Pbad regulated XylE - catechol 2,3-dioxygenase from P.putida with terminator
BBa_K648013BBa_K648013 Version 1 (Component)GFP with Standard 25 Prefix/Suffix
BBa_K1045010BBa_K1045010 Version 1 (Component)RBS BBa_B0034 with inversed Pre- and Suffix
BBa_K2088008BBa_K2088008 Version 1 (Component)catechol 2,3-dioxygenase gene with native rbs
BBa_K2088000BBa_K2088000 Version 1 (Component)catechol 2,3-dioxygenase gene
BBa_K1392910BBa_K1392910 Version 1 (Component)with L+ arabinose promoter, caterchol 2,3-dioxygenase activate to degration of catechol.
BBa_K331011BBa_K331011 Version 1 (Component)Catechol 2,3-dioxygenase with a C-terminus arginine tag
BBa_K331010BBa_K331010 Version 1 (Component)Catechol 2,3-dioxygenase with a N-terminus arginine tag
BBa_K208014BBa_K208014 Version 1 (Component)GFP (Silver Fusion)/Double Terminator
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_K331013BBa_K331013 Version 1 (Component)IPTG Inducible Catechol 2,3-dioxygenase
SuffixBBa_G00001 Version 1 (Component)BioBrick cloning site suffix
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag
BBa_K331017BBa_K331017 Version 1 (Component)IPTG Inducible Catechol 2,3-dioxygenase with C-terminal Arginine Tag
BBa_K331016BBa_K331016 Version 1 (Component)IPTG Inducible Catechol 2,3-dioxygenase with N-terminal Arginine Tag
BBa_K371050BBa_K371050 Version 1 (Component)MSF(meta-suffix)
BBa_I15010BBa_I15010 Version 1 (Component)cph8 (Cph1/EnvZ fusion)
BBa_K1159012BBa_K1159012 Version 1 (Component)Secretory Catechol-2,3-dioxygenase (SERK-SigP_XylE) in RFC[25] N-Part
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
BBa_K2088010BBa_K2088010 Version 1 (Component)A device that expresses the XylE- catechol 2,3-dioxygenase to degrade the catechol .
BBa_K1321300BBa_K1321300 Version 1 (Component)pSEVA331-Bb - pSEVA331 with biobrick prefix and suffix
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
DioxyBBa_K1688022 Version 1 (Component)Catechol 1,2 Dioxygenase + HlyA export tag
BBa_E0051BBa_E0051 Version 1 (Component)lacZa.GFP fusion
BBa_K228000BBa_K228000 Version 1 (Component)T7ptag(T7polymerase with amber mutation)
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_K192099BBa_K192099 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K125500BBa_K125500 Version 1 (Component)GFP fusion brick
BBa_K1159008BBa_K1159008 Version 1 (Component)Secretory Catechol-2,3-dioxygenase (IgKappa-SigP_XylE) in RFC[25] N-Part
BBa_K1159018BBa_K1159018 Version 1 (Component)Membrane-anchored Catechol-2,3-dioxygenase (XylE) in RFC[25] N-Part
BBa_K357000BBa_K357000 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K192100BBa_K192100 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K2066527BBa_K2066527 Version 1 (Component)B0034 with scar TACTAG
BBa_K542012BBa_K542012 Version 1 (Component)Catechol 2,3-dioxygenase with a C-terminal Arg-tag and Double Terminator (no promoter/RBS)
BBa_K648005BBa_K648005 Version 1 (Component)Short Fusion Protein Linker: GGSG with standard 25 prefix/suffix