Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
BBa_B0015BBa_B0015 Version 1 (Component)double terminator (B0010-B0012)
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0011BBa_B0011 Version 1 (Component)LuxICDABEG (+/-)
BBa_B0014BBa_B0014 Version 1 (Component)double terminator (B0012-B0011)
Scar 25BBa_B0105 Version 1 (Component)RFC 25 Scar Sequence
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_B0025BBa_B0025 Version 1 (Component)double terminator (B0015), reversed
BBa_B0016BBa_B0016 Version 1 (Component)Terminator (T7 RNAP specific, T_Phi)
BBa_B0017BBa_B0017 Version 1 (Component)double terminator (B0010-B0010)
BBa_B0024BBa_B0024 Version 1 (Component)double terminator (B0012-B0011), reversed
BBa_B0035BBa_B0035 Version 1 (Component)RBS (B0030 derivative)
spacerBBa_B0040 Version 1 (Component)Spacer.1 (generic)
BBa_B0013BBa_B0013 Version 1 (Component)TE from coliphage T7 (+/-)
PspaSPspaS_core Version (Component) BBa_B0053BBa_B0053 Version 1 (Component)Terminator (His)
BBa_K823006BBa_K823006 Version 1 (Component)Anderson promoter J23102
BBa_B0029BBa_B0029 Version 1 (Component)1 bp deletion from B0031
BBa_B0021BBa_B0021 Version 1 (Component)LuxICDABEG (+/-), reversed
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0055BBa_B0055 Version 1 (Component)-- No description --
BBa_K823016BBa_K823016 Version 1 (Component)lacZ full-length (RBS+ TERM-)
BBa_B0054BBa_B0054 Version 1 (Component)Transcriptional terminator
BBa_B0062BBa_B0062 Version 1 (Component)Terminator (Reverse B0052)
pSBBs4SBBa_K823024 Version 1 (Component)pSB<sub>Bs</sub>4S-P<i><sub>xyl</i></sub>: Integrative expression vector for <i>Bacillus subtilis</i
pSBBs0KBBa_K823026 Version 1 (Component)pSB<sub>Bs</sub>0K-P<sub>spac</sub> (replicative Bacillus subtilis expression vector; IPTG inducible
spac+efeBBa_K1065203 Version 1 (Component)Efe+Bba_B0015 in pSpac (BBa_K823026)
TSSBBa_B0042 Version 1 (Component)Translational stop sequence
TOPOBBa_B0044 Version 1 (Component)Topoisomerase I mediated cloning site (reverse)
TOPOBBa_B0043 Version 1 (Component)Topoisomerase I mediated cloning site (forward)
BBa_B0023BBa_B0023 Version 1 (Component)TE from coliphage T7, reversed
BBa_K223022BBa_K223022 Version 1 (Component)IL-6 + HlyA
BBa_B0064BBa_B0064 Version 1 (Component)Tuned RBS for Q04401
BBa_B0036BBa_B0036 Version 1 (Component)Specialized RBS
NheIBBa_B0045 Version 1 (Component)NheI restriction enzyme site (XbaI, SpeI compatible overhang)
pSBBs1CBBa_K823021 Version 1 (Component)pSB<sub>Bs</sub>1C-<i>lacZ</i> (lacZ reporter vector for <i>B. subtilis</i>)
pSBBs3CBBa_K823025 Version 1 (Component)pSB<sub>Bs</sub>3C-<i>luxABCDE</i> (lux reporter vector for B.subtilis)
BBa_K823028BBa_K823028 Version 1 (Component)luc luciferase + RBS, codon optimized for Bacillus subtilis
BBa_K823029BBa_K823029 Version 1 (Component)mKate2, a red monomeric fluorescent protein, B. subtilis optimized
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
E1B3BBa_K273026 Version 1 (Component)E1B3