SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

GAL1
BBa_J63006 Version 1 (Component)
yeast GAL1 promoter

tetA(C)b
BBa_J31006 Version 1 (Component)
tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]

BBa_K110017
BBa_K110017 Version 1 (Component)
yESapphire Optimized Yeast FP (backwards)

mCherry
BBa_E2060 Version 1 (Component)
derivative of mRFP1, yeast-optimized

BBa_K165002
BBa_K165002 Version 1 (Component)
Kozak sequence (yeast RBS)

BBa_K110010
BBa_K110010 Version 1 (Component)
yESapphire Optimized Yeast FP

mRFP1
BBa_E2050 Version 1 (Component)
derivative of mRFP1, yeast-optimized

yfp
BBa_K165005 Version 1 (Component)
Venus YFP, yeast optimized for fusion

BBa_K801012
BBa_K801012 Version 1 (Component)
ADH1 yeast terminator

BBa_E2030
BBa_E2030 Version 1 (Component)
enhanced version of EYFP, yeast-optimized

mCherry
BBa_K165004 Version 1 (Component)
mCherry, yeast optimized for fusion

BBa_K165010
BBa_K165010 Version 1 (Component)
ADH1 yeast transcription terminator

BBa_K110023
BBa_K110023 Version 1 (Component)
YemCitrine Yeast Optimized (backwards)

BBa_K110019
BBa_K110019 Version 1 (Component)
mCherry FP (Backwards)

BBa_J31013
BBa_J31013 Version 1 (Component)
pLac Backwards [cf. BBa_R0010]

BBa_K110021
BBa_K110021 Version 1 (Component)
Venus YFP Yeast Optimized (backwards)

mCherry
BBa_J06505 Version 1 (Component)
monomeric RFP optimized for bacteria

pTEF
BBa_K165037 Version 1 (Component)
TEF2 yeast constitutive promoter

BBa_K392003
BBa_K392003 Version 1 (Component)
yeast ADH1 terminator

BBa_K801080
BBa_K801080 Version 1 (Component)
Prepro-Thaumatin, yeast codon optimized

BBa_E2020
BBa_E2020 Version 1 (Component)
enhanced version of ECFP, yeast-optimized

BBa_K530008
BBa_K530008 Version 1 (Component)
TDH3 Yeast Promoter

P0310
BBa_J63005 Version 1 (Component)
yeast ADH1 promoter

SV40 NLS
BBa_J63008 Version 1 (Component)
SV40 nuclear localization sequence from SV40; yeast codon optimized

HisTag
BBa_J18909 Version 1 (Component)
His tag (6xHis; E. coli - optimized)

BBa_K530019
BBa_K530019 Version 1 (Component)
HHO1 Yeast UTR

BBa_K1100006
BBa_K1100006 Version 1 (Component)
optimized sfGFP with Csy4 insulator loci

BBa_K416003
BBa_K416003 Version 1 (Component)
Yeast Secretion Tag

BBa_K194001
BBa_K194001 Version 1 (Component)
GFP (a yeast- and FACS-optimized GFP variant),

BBa_M50029
BBa_M50029 Version 1 (Component)
mTurquoise2 FP

BBa_K319047
BBa_K319047 Version 1 (Component)
yDsRed FP

KanR Backw
BBa_J31002 Version 1 (Component)
kanamycin resistance backwards (KanB) [cf. BBa_J23012 & BBa_J31003]

BBa_K1486023
BBa_K1486023 Version 1 (Component)
Yeast optimized superfolder GFP

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

PKI NES
BBa_J63007 Version 1 (Component)
PKI nuclear export sequence; yeast codon optimized

BBa_J70029
BBa_J70029 Version 1 (Component)
RBS + mCherry gene, optimized for expression in Me. florum and E. coli

BBa_K210005
BBa_K210005 Version 1 (Component)
LacI generator yeast-optimized

BBa_K1603003
BBa_K1603003 Version 1 (Component)
RecA - optimized for yeast

BBa_K1603004
BBa_K1603004 Version 1 (Component)
SSB - optimized for yeast

BBa_K110020
BBa_K110020 Version 1 (Component)
Venus YFP Yeast Optimized

BBa_K315014
BBa_K315014 Version 1 (Component)
TetA (Optimized from bp 1 to 141)

BBa_K784041
BBa_K784041 Version 1 (Component)
pTetO+ mCherry (FP)

BBa_K084002
BBa_K084002 Version 1 (Component)
Venus YFP with RBS (yeast-optimized)