Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
LacIBBa_R0010 Version 1 (Component)promoter (lacI regulated)
lacI+pLBBa_R0011 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid)
p(tetR)BBa_R0040 Version 1 (Component)TetR repressible promoter
BBa_J23100BBa_J23100 Version 1 (Component)constitutive promoter family member
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
BBa_J23119BBa_J23119 Version 1 (Component)constitutive promoter family member
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
BBa_J23106BBa_J23106 Version 1 (Component)constitutive promoter family member
cI lamBBa_R0051 Version 1 (Component)promoter (lambda cI regulated)
BBa_J23101BBa_J23101 Version 1 (Component)constitutive promoter family member
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
BBa_I13453BBa_I13453 Version 1 (Component)Pbad promoter
pT7BBa_I719005 Version 1 (Component)T7 Promoter
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J23110BBa_J23110 Version 1 (Component)constitutive promoter family member
LacILacI Version 1 (Component) cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
BBa_J23114BBa_J23114 Version 1 (Component)constitutive promoter family member
LasR+PAIBBa_R0079 Version 1 (Component)Promoter (LasR & PAI regulated)
BBa_J23102BBa_J23102 Version 1 (Component)constitutive promoter family member
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
BBa_J23104BBa_J23104 Version 1 (Component)constitutive promoter family member
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
BBa_J23113BBa_J23113 Version 1 (Component)constitutive promoter family member
BBa_J23116BBa_J23116 Version 1 (Component)constitutive promoter family member
BBa_I712074BBa_I712074 Version 1 (Component)T7 promoter (strong promoter from T7 bacteriophage)
lux pLBBa_R0063 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pL)<br>
OmpRBBa_R0082 Version 1 (Component)Promoter (OmpR, positive)
BBa_J23118BBa_J23118 Version 1 (Component)constitutive promoter family member
BBa_J23105BBa_J23105 Version 1 (Component)constitutive promoter family member
BBa_I712004BBa_I712004 Version 1 (Component)CMV promoter
AraCBBa_R0080 Version 1 (Component)Promoter (AraC regulated)
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
cII p22BBa_R0053 Version 1 (Component)Promoter (p22 cII regulated)
RhlR+C4BBa_R0071 Version 1 (Component)Promoter (RhlR & C4-HSL regulated)
BBa_J23109BBa_J23109 Version 1 (Component)constitutive promoter family member
BBa_J23107BBa_J23107 Version 1 (Component)constitutive promoter family member
cI 434BBa_R0052 Version 1 (Component)Promoter (434 cI regulated)
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_J23115BBa_J23115 Version 1 (Component)constitutive promoter family member
BBa_J23117BBa_J23117 Version 1 (Component)constitutive promoter family member
PspaSPspaS_core Version (Component) BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K731500BBa_K731500 Version 1 (Component)[LacI + LacIq promoter] reverse + [tac promoter + lac operator] forward