Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
LacIBBa_R0010 Version 1 (Component)promoter (lacI regulated)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
lacI+pLBBa_R0011 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid)
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
LacILacI Version 1 (Component) cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
cI lamBBa_R0051 Version 1 (Component)promoter (lambda cI regulated)
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
pSB1A3 lacBBa_K627015 Version 1 (Component)Plasmid backbone pSB1A3 carrying the lac operon induction system
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
lacZ-alphaBBa_I732006 Version 1 (Component)lacZ alpha fragment
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
pSB1A3 AraBBa_K627014 Version 1 (Component)Plasmid backbone pSB1A3 carrying the arabinose induction system
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
lacIBBa_Q04121 Version 1 (Component)QPI (B0034.C0012.B0015.R0011)
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
LacIBBa_I732100 Version 1 (Component)LacI
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
ScreeningpSB1A10 Version 1 (Component)Screening Plasmid v1.0
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid