SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

scar
BBa_K112999 Version 1 (Component)
BBb1 scar sequence

BBa_I20285
BBa_I20285 Version 1 (Component)
Bxb1 Excisionase-Freiburg standard

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

His
BBa_K157011 Version 1 (Component)
His affinity tag; Freiburg standard

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

linker
BBa_K157009 Version 1 (Component)
Split fluorophore linker; Freiburg standard

BBa_I20289
BBa_I20289 Version 1 (Component)
PhiRVI excisionase-Freiburg Standard

BBa_K157012
BBa_K157012 Version 1 (Component)
Strep affinity tag II; Freiburg standard

BBa_K1321009
BBa_K1321009 Version 1 (Component)
Nickel Binding Protein (NiBP) Freiburg format (RFC[25])

BBa_K1321337
BBa_K1321337 Version 1 (Component)
sfGFP in Freiburg format (RFC 25)

BBa_I20287
BBa_I20287 Version 1 (Component)
TP901-1 Excisionase-Freiburg standard

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

Bxb1
BBa_I20284 Version 1 (Component)
Bacteriophage Bxb1 Integrase-Freiburg standard

BBa_K1321339
BBa_K1321339 Version 1 (Component)
CBDcenA+Linker, RFC 25 standard

BBa_K1351012
BBa_K1351012 Version 1 (Component)
spaS Subtilin (antimicrobial peptide, Freiburg standard)

Bxb1_Int
BBa_K907000 Version 1 (Component)
Mycobacterium Phage Bxb1 gp35, DNA integrase

linker
BBa_K365005 Version 1 (Component)
20 aa linker RFC-25 (fusion standard Freiburg)

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BBa_K648013
BBa_K648013 Version 1 (Component)
GFP with Standard 25 Prefix/Suffix

Bxb1_Xis
BBa_K907001 Version 1 (Component)
Mycobacterium Phage Bxb1 gp47, DNA excisionase

beta-galac
BBa_K823019 Version 1 (Component)
LacZ (RBS+Freiburg standard)

BBa_K1321011
BBa_K1321011 Version 1 (Component)
SmtA metallothionein in Freiburg format (RFC[25])

BBa_I20288
BBa_I20288 Version 1 (Component)
PhiRVI integrase- Freiburg standard

BBa_K549025
BBa_K549025 Version 1 (Component)
petE2 in Freiburg-standard

BBa_K1051004
BBa_K1051004 Version 1 (Component)
Stop codon free mOrange in RFC[23] standard

BBa_K823039
BBa_K823039 Version 1 (Component)
gfpmut1 (B. subtilis optimized + Freiburg standard)

BBa_K823038
BBa_K823038 Version 1 (Component)
Strep-tag (Freiburg standard+RBS)

BBa_I20286
BBa_I20286 Version 1 (Component)
TP901-1 integrase- Freiburg standard

BBa_K1321012
BBa_K1321012 Version 1 (Component)
fMT metallothionein in Freiburg format (RFC[25])

BBa_K823035
BBa_K823035 Version 1 (Component)
HA-tag (Freiburg standard+RBS)

BBa_K823036
BBa_K823036 Version 1 (Component)
cMyc-tag (Freiburg standard+RBS)

BBa_K549021
BBa_K549021 Version 1 (Component)
pabA with Freiburg-standard in pSB1C3

BBa_K823037
BBa_K823037 Version 1 (Component)
10x His-tag (Freiburg standard+RBS)

BBa_K823034
BBa_K823034 Version 1 (Component)
3x FLAG tag (Freiburg standard+RBS)

BBa_K1051002
BBa_K1051002 Version 1 (Component)
Stop codon free EYFP in RFC[23] standard

BBa_K929301
BBa_K929301 Version 1 (Component)
Potsdam Standard Backbone

BBa_I11031
BBa_I11031 Version 1 (Component)
excisionase from E. coli phage P22 (removes prophage from host genome)

BBa_K2116026
BBa_K2116026 Version 1 (Component)
bxb1 integrase

comDE
BBa_K1351016 Version 1 (Component)
comDE Quorum Sensing two component system (Freiburg Standard)

BBa_K823055
BBa_K823055 Version 1 (Component)
pSB1C3F-Vector pSB1C3 with RFP-cassette in Freiburg Standard

BBa_I11021
BBa_I11021 Version 1 (Component)
excisionase from E. coli phage lambda (removes prophage from host genome)

CBDcex
BBa_K863101 Version 1 (Component)
Cellulose binding Domain of Cellulomonas Fimi Exoglucanse (Freiburg-Standard)

BBa_K1051001
BBa_K1051001 Version 1 (Component)
Stop codon free ECFP in RFC[23] standard

linker
BBa_K157013 Version 1 (Component)
15 aa flexible glycine-serine protein domain linker; Freiburg standard

His_FluA
BBa_S04282 Version 1 (Component)
K157011(His affinity tag; Freiburg standard):K157004(Fluorescin-A-binding )

BBa_K929302
BBa_K929302 Version 1 (Component)
AID in Potsdam Standard

CBDclos(T7
BBa_K863112 Version 1 (Component)
Cellulose binding domain of C. cellulovorans with T7, RBS, GS-Linker (Freiburg-Standard)