Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
BBa_K1459003BBa_K1459003 Version 1 (Component)PmrA-PmrB(LBT) two-component system
BBa_K1459004BBa_K1459004 Version 1 (Component)PmrA-PmrB(LBT) with terminator (BBa_B1006)
BBa_K1459005BBa_K1459005 Version 1 (Component)PmrA-PmrB(N-term) from Salmonella
BBa_K1459010BBa_K1459010 Version 1 (Component)PmrB(LBT) from Salmonella
BBa_J196003BBa_J196003 Version 1 (Component)System PrrA/PrrB + LacZ
PmraBBa_S03331 Version 1 (Component)--Specify Parts List--
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K776015BBa_K776015 Version 1 (Component)PrrA/PrrB/PrrC
BBa_K1459001BBa_K1459001 Version 1 (Component)PmrA from Salmonella enterica
BBa_K1459016BBa_K1459016 Version 1 (Component)PmrB(WT) from Salmonella enterica
BBa_K1459007BBa_K1459007 Version 1 (Component)pmrC-GFP-terminator
BBa_K1459008BBa_K1459008 Version 1 (Component)pmrC-GFP-terminator
BBa_K1459000BBa_K1459000 Version 1 (Component)Transcriptional factor PmrA sequence from Salmonella enterica.
BBa_K1459002BBa_K1459002 Version 1 (Component)C-term of PmrB from Salmonella enterica
BBa_K776017BBa_K776017 Version 1 (Component)Prom J23104 + PrrA + PrrB + PrrC + DT
BBa_K895007BBa_K895007 Version 1 (Component)Tetrathionate-sensing two-component system linked to GFP production.
comDE natiBBa_K1351015 Version 1 (Component)comDE Quorum Sensing two component system - native
comDEBBa_K1351016 Version 1 (Component)comDE Quorum Sensing two component system (Freiburg Standard)
BBa_I746200BBa_I746200 Version 1 (Component)FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.
BBa_K602001BBa_K602001 Version 1 (Component)<i>Deinococcus radiodurans</i> PprA
BBa_K1797014BBa_K1797014 Version 1 (Component)Gam and Bet-Two Components of the Red Recombination System
BBa_K364309BBa_K364309 Version 1 (Component)Human ER LBD
BBa_I712011BBa_I712011 Version 1 (Component)CUb (split ubiquitin system)