SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

pBad/araC
BBa_I0500 Version 1 (Component)
Inducible pBad/araC promoter

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

BBa_I13453
BBa_I13453 Version 1 (Component)
Pbad promoter

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

pBAD
BBa_K206000 Version 1 (Component)
pBAD strong

BBa_K325209
BBa_K325209 Version 1 (Component)
Green Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K325259
BBa_K325259 Version 1 (Component)
Yellow Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325218
BBa_K325218 Version 1 (Component)
Orange Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325219
BBa_K325219 Version 1 (Component)
Red Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_I712019
BBa_I712019 Version 1 (Component)
Firefly luciferase - luciferase from Photinus pyralis

BBa_K325100
BBa_K325100 Version 1 (Component)
EPIC Firefly Luciferase and LRE <BR><i>P. Pyralis<BR>(E. coli optimised)</i>

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

BBa_K325108
BBa_K325108 Version 1 (Component)
EPIC Firefly Luciferase (under pBAD)<BR><i>P. Pyralis<BR>(E. coli optimised)</i>

BBa_K325101
BBa_K325101 Version 1 (Component)
EPIC Firefly Luciferase <BR><i>Photinus Pyralis<BR>(E. coli optimised)</i>

BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

BBa_K325211
BBa_K325211 Version 1 (Component)
Orange Firefly Luciferase<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325903
BBa_K325903 Version 1 (Component)
luxEG <BR><i>V. Fischeri<BR>(E. coli optimised)</i>

BBa_K325229
BBa_K325229 Version 1 (Component)
Green Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325249
BBa_K325249 Version 1 (Component)
Scarlet Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325239
BBa_K325239 Version 1 (Component)
Red Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

BBa_K325909
BBa_K325909 Version 1 (Component)
Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

BBa_J10063
BBa_J10063 Version 1 (Component)
Green Firefly Luciferase and LRE L. Cruciata (E. coli optimised)

BBa_K325202
BBa_K325202 Version 1 (Component)
Luciferin Regenerating Enzyme (LRE)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325109
BBa_K325109 Version 1 (Component)
EPIC Firefly Luciferase and LRE (under pBAD)<BR><i>P. Pyralis<BR>(E. coli optimised)</i>

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BBa_K325902
BBa_K325902 Version 1 (Component)
luxCD<BR><i>V. Fischeri<BR>(E. coli optimised)</i>

BBa_K325102
BBa_K325102 Version 1 (Component)
Luciferin Regenerating Enzyme (LRE)<BR><i>P. Pyralis<BR>(E. coli optimised)</i>

BBa_K733001
BBa_K733001 Version 1 (Component)
<i>Ptms</i> - a constitutive promoter in <i>E. coli</i> and <i>B. subtilis</i>.

BBa_K325905
BBa_K325905 Version 1 (Component)
Bacterial Lux reporter <BR> CDEG p&#955; AB<BR><i>(E. coli optimised)</i>

HisTag
BBa_J18909 Version 1 (Component)
His tag (6xHis; E. coli - optimized)

BBa_K531006
BBa_K531006 Version 1 (Component)
Optimized esp gene for <i>C. crescentus</i>

BBa_K654033
BBa_K654033 Version 1 (Component)
Firefly Luciferase + Terminator

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_J70029
BBa_J70029 Version 1 (Component)
RBS + mCherry gene, optimized for expression in Me. florum and E. coli

BBa_K733010
BBa_K733010 Version 1 (Component)
<i>Ptms</i>+RBS+<i>ydcD</i>.

BBa_K733013
BBa_K733013 Version 1 (Component)
<i>Pveg</i>+R.B.S.

cI 434
BBa_R1052 Version 1 (Component)
Promoter, Standard (434 cI regulated)<br>

BBa_K733006
BBa_K733006 Version 1 (Component)
<i>ydjM</i>+<i>Bmp2</i>