Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

BBa_K945007
BBa_K945007 Version 1 (Component)
Pichia pastoris optimized His-CrtB-PTS1

BBa_K945006
BBa_K945006 Version 1 (Component)
Pichia pastoris optimized His-CrtE-PTS1

BBa_K945008
BBa_K945008 Version 1 (Component)
Pichia pastoris optimized His-CrtI-PTS1

BBa_K945005
BBa_K945005 Version 1 (Component)
Pichia pastoris optimized His-GFP-PTS1

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

BBa_K945004
BBa_K945004 Version 1 (Component)
Pichia pastoris optimized His-GFP

BBa_K118002
BBa_K118002 Version 1 (Component)
crtB coding sequence encoding phytoene synthase

HisTag
BBa_J18909 Version 1 (Component)
His tag (6xHis; E. coli - optimized)

RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

BBa_K204091
BBa_K204091 Version 1 (Component)
plac+crtE+crtB+crtI+crtY

BBa_K1485005
BBa_K1485005 Version 1 (Component)
crtY+crtZ+crtI

BBa_K863202
BBa_K863202 Version 1 (Component)
his4 gene from Pichia pastoris

BBa_K204095
BBa_K204095 Version 1 (Component)
plac+crtE+crtB+crtZ

BBa_K204096
BBa_K204096 Version 1 (Component)
ptet+crtE+crtB+crtZ

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

mCherry
BBa_J06505 Version 1 (Component)
monomeric RFP optimized for bacteria

BBa_K118003
BBa_K118003 Version 1 (Component)
crtI coding sequence encoding phytoene dehydrogenase

BBa_K1148003
BBa_K1148003 Version 1 (Component)
PhlbA CrtE + CrtB + Crt I

BBa_K1187000
BBa_K1187000 Version 1 (Component)
Human insulin gene, optimized for expression in Pichia pastoris

BBa_J29015
BBa_J29015 Version 1 (Component)
arabinose induable CrtE CrtB CrtI generator

BBa_K1187001
BBa_K1187001 Version 1 (Component)
Human insulin gene, optimized for expression in Pichia pastoris

BBa_K431000
BBa_K431000 Version 1 (Component)
Pichia pastoris formaldehyde dehydrogenase

BBa_K863203
BBa_K863203 Version 1 (Component)
AOX1 Terminator from Pichia pastoris

Hin
BBa_J31000 Version 1 (Component)
DNA-invertase Hin from Salmonella typhimurium

BBa_K1485003
BBa_K1485003 Version 1 (Component)
crtE+crtB

BBa_K1078001
BBa_K1078001 Version 1 (Component)
Strong reporter device optimized for Pichia pastoris, activated by methanol

BBa_K204064
BBa_K204064 Version 1 (Component)
crtE + crtB

mCherry
BBa_E2060 Version 1 (Component)
derivative of mRFP1, yeast-optimized

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

rbs+crtZ
BBa_I742158 Version 1 (Component)
crtZ (beta-carotene hydroxylase) with native rbs

BBa_K431010
BBa_K431010 Version 1 (Component)
Formaldehyde Dehydrogenase (FLD1) from ''Pichia pastoris''

BBa_I742151
BBa_I742151 Version 1 (Component)
crtE (geranylgeranyl pyrophosphate synthase) coding sequence.

mRFP1
BBa_E2050 Version 1 (Component)
derivative of mRFP1, yeast-optimized

BBa_B0053
BBa_B0053 Version 1 (Component)
Terminator (His)

BBa_K204076
BBa_K204076 Version 1 (Component)
plac+crtE+crtB

BBa_K204077
BBa_K204077 Version 1 (Component)
ptet+crtE+crtB

BBa_K1485004
BBa_K1485004 Version 1 (Component)
crtY+crtZ

BBa_K118009
BBa_K118009 Version 1 (Component)
crtB (phytoene synthase) + crtI (phytoene dehydrogenase)

BBa_K204065
BBa_K204065 Version 1 (Component)
crtI + crtY

yfp
BBa_K165005 Version 1 (Component)
Venus YFP, yeast optimized for fusion