Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
GFP reportBBa_E0240 Version 1 (Component)GFP generator
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
OmpRBBa_R0082 Version 1 (Component)Promoter (OmpR, positive)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
sRIPBBa_K237003 Version 1 (Component)RIP +export signal (OmpA). Quorum sensing inhibitor of Staphylococcus spp. (Including MRSA)
RIPBBa_K237000 Version 1 (Component)RIP - Quorum sensing inhibitor of Staphylococcus spp. (Including MRSA)
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
OmpRBBa_R0084 Version 1 (Component)Promoter (OmpR, positive)
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
OmpABBa_K103006 Version 1 (Component)OmpA outer membrane protein A fused to linker; displays proteins on cell surface
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K237004BBa_K237004 Version 1 (Component)Constitutive sRIP Generator. RIP - Quorum sensing inhibitor of Staphylococcus spp.
BBa_K237002BBa_K237002 Version 1 (Component)Constitutive RIP Generator. RIP - Quorum sensing inhibitor of Staphylococcus spp.
BBa_K237006BBa_K237006 Version 1 (Component)IPTG inducible sRIP Generator. RIP - Quorum sensing inhibitor of Staphylococcus spp.
BBa_K237001BBa_K237001 Version 1 (Component)IPTG inducible RIP Generator. RIP - Quorum sensing inhibitor of Staphylococcus spp.
OmpRBBa_R0083 Version 1 (Component)Promoter (OmpR, positive)
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
RFP2BBa_I715023 Version 1 (Component)Carboxyl portion of RFP
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
RFP1BBa_I715022 Version 1 (Component)Amino Portion of RFP
SPzim17BBa_K809201 Version 1 (Component)signal peptide of ZIM17
BBa_K081014BBa_K081014 Version 1 (Component)RFP protein generator - PoPS->RFP
BBa_K208003BBa_K208003 Version 1 (Component)OmpA Signal Peptide - Silver Fusion Compatible
BBa_K1499500BBa_K1499500 Version 1 (Component)quorum sensing machinery that activates GFP expression
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
AraC O2BBa_R0081 Version 1 (Component)Inhibitor (AraC loop attachment with O2 site)
BBa_K1827000BBa_K1827000 Version 1 (Component)E.coli signal-lpp-ompA
mRFPrBBa_J31008 Version 1 (Component)RFP reverse
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_K764027BBa_K764027 Version 1 (Component)ompA signal peptide
BBa_M39016BBa_M39016 Version 1 (Component)Quorum Sensing Device
BBa_K1073002BBa_K1073002 Version 1 (Component)Inducible promoter of the lux quorum sensing system with RBS