iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
BBa_F2620BBa_F2620 Version 1 (Component)3OC<sub>6</sub>HSL -> PoPS Receiver
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
GFP reportBBa_E0240 Version 1 (Component)GFP generator
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BBa_K823003BBa_K823003 Version 1 (Component)P<sub>veg</sub>
BBa_F1610BBa_F1610 Version 1 (Component)3OC<sub>6</sub>HSL Sender Device
BBa_F2622BBa_F2622 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
lux pLBBa_R0063 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pL)<br>
pSBBs3CBBa_K823025 Version 1 (Component)pSB<sub>Bs</sub>3C-<i>luxABCDE</i> (lux reporter vector for B.subtilis)
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
pSBBs4SBBa_K823024 Version 1 (Component)pSB<sub>Bs</sub>4S-P<i><sub>xyl</i></sub>: Integrative expression vector for <i>Bacillus subtilis</i
BBa_F2621BBa_F2621 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
pSBBs1CBBa_K823021 Version 1 (Component)pSB<sub>Bs</sub>1C-<i>lacZ</i> (lacZ reporter vector for <i>B. subtilis</i>)
BBa_K823001BBa_K823001 Version 1 (Component)P<sub><i>liaI</i></sub> promoter of <i>Bacillus subtilis</i>
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
BBa_K1682004BBa_K1682004 Version 1 (Component)<i>P<sub>kdpF</sub>[-15, T>G]</i>
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K531007BBa_K531007 Version 1 (Component)P<sub>rsaA</sub> constitutive promoter, <i>esp</i> optimized for <i>Caulobacter</i>, and <i>rsaA</i>
pSBBs1CBBa_K823023 Version 1 (Component)pSB<sub>Bs</sub>1C: Empty backbone for integration into <i>Bacillus subtilis</i> <i>amyE</i> locus
pSBBs0KBBa_K823026 Version 1 (Component)pSB<sub>Bs</sub>0K-P<sub>spac</sub> (replicative Bacillus subtilis expression vector; IPTG inducible
pSBBs4SBBa_K823022 Version 1 (Component)pSB<sub>Bs</sub>4S: Empty backbone for integration into <i/>Bacillus subtilis thrC</i> locus
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
FurBO_11498 Version 1 (Component) BBa_K823002BBa_K823002 Version 1 (Component)P<sub>lepA</sub>
BBa_K531006BBa_K531006 Version 1 (Component)Optimized esp gene for <i>C. crescentus</i>
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_K1682000BBa_K1682000 Version 1 (Component)<i>P<sub>kdpF</sub></i>
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
BBa_K733001BBa_K733001 Version 1 (Component)<i>Ptms</i> - a constitutive promoter in <i>E. coli</i> and <i>B. subtilis</i>.
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
pSBBs2EBBa_K823027 Version 1 (Component)pSB<sub>Bs</sub>2E: Empty backbone for integration into Bacillus subtilis lacA locus
BBa_K1682002BBa_K1682002 Version 1 (Component)<i>P<sub>kdpF</sub>[-15, T>A]</i>
BBa_K1682003BBa_K1682003 Version 1 (Component)<i>P<sub>kdpF</sub>[-15, T>C]</i>
BBa_K1351039BBa_K1351039 Version 1 (Component)P<sub><i>xylA</i></sub>, a xylose inducible promoter for <i>Bacillus subtilis</i>
BBa_K823000BBa_K823000 Version 1 (Component)P<sub>liaG</sub>
BBa_K531005BBa_K531005 Version 1 (Component)P<sub>xyl</sub> promoter+optimized <i>esp</i>+<i>rsaA</i> secretion tag
PcotYZBBa_K823030 Version 1 (Component)P<sub><i>cotYZ</i></sub>: <i>B. subtilis</i> promoter regulating expression of spore crust proteins