Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SEGA021SEGA021 Version 1 (Component)natural linear DNA.
SEGA022SEGA022 Version 1 (Component)natural linear DNA.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
His-FluA-SBBa_K243010 Version 1 (Component)His-FluA-Split Linker-Fok_i
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_K243016BBa_K243016 Version 1 (Component)His-FluA-Long Linker-Fok_i
BBa_K243013BBa_K243013 Version 1 (Component)His-FluA-Short Linker-Fok_i
BBa_K243014BBa_K243014 Version 1 (Component)His-FluA-Middle Linker-Fok_i
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
Fok_iBBa_K243001 Version 1 (Component)Protein domain (inactive) of the restriction endonuclease FokI
BBa_K243018BBa_K243018 Version 1 (Component)His-DigA-Split Linker-Fok_i
Fok_aBBa_K243000 Version 1 (Component)Protein domain (active) of the restriction endonuclease FokI
BBa_K243036BBa_K243036 Version 1 (Component)His-Dig-Split Linker-Fok_a
linkerBBa_K157009 Version 1 (Component)Split fluorophore linker; Freiburg standard
BBa_K243025BBa_K243025 Version 1 (Component)Strep-FluA-Middle Linker-Fok_i
BBa_K243023BBa_K243023 Version 1 (Component)Strep-FluA-Long Linker-Fok_i
BBa_K243021BBa_K243021 Version 1 (Component)DsbA-His-DigA-Split Linker-Fok_a
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K243015BBa_K243015 Version 1 (Component)Strep-DigA-Split Linker-Fok_i
BBa_K243028BBa_K243028 Version 1 (Component)FOS-Split Linker-Fok_a
BBa_K1462502BBa_K1462502 Version 1 (Component)PDZ domain + Linker
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_K243024BBa_K243024 Version 1 (Component)Strep-FluA-Middle Linker-Fok_a
BBa_K1462503BBa_K1462503 Version 1 (Component)SH3 domain + Linker
BBa_K1462501BBa_K1462501 Version 1 (Component)GBD domian + Linker
BBa_K243017BBa_K243017 Version 1 (Component)Strep-DigA-Split Linker-Fok_a
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
HisBBa_K157011 Version 1 (Component)His affinity tag; Freiburg standard
BBa_K243022BBa_K243022 Version 1 (Component)DsbA-Strep-DigA-Split Linker-Fok_a
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
BBa_K323107BBa_K323107 Version 1 (Component)PBSII zinc finger + linker
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
LongLinkerBBa_K243009 Version 1 (Component)Long Linker-Fok_i
BBa_I712011BBa_I712011 Version 1 (Component)CUb (split ubiquitin system)
BBa_B0053BBa_B0053 Version 1 (Component)Terminator (His)
Split-Fok_BBa_K243019 Version 1 (Component)SplitLi-Fok_i
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
BBa_K1896004BBa_K1896004 Version 1 (Component)linker-Streptavidin-His (tetrameric)
BBa_K323105BBa_K323105 Version 1 (Component)Zif268 zinc finger + linker
ML-Fok_ABBa_K243008 Version 1 (Component)Middle Linker-Fok_a
SL-Fok_ABBa_K243007 Version 1 (Component)Short Linker-Fok_a