SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I746000
BBa_I746000 Version 1 (Component)
AIP generator (agrB + agrD with RBSes)

BBa_I746100
BBa_I746100 Version 1 (Component)
AIP sensor infrastructure (agrC + agrA from S. aureus with RBSes)

agrD
BBa_K090601 Version 1 (Component)
AgrD: AGR System AIP Precursor

BBa_I746001
BBa_I746001 Version 1 (Component)
I746000 (AIP generator - agrB + agrD with RBSes) + B0015 (Terminator)

BBa_I746101
BBa_I746101 Version 1 (Component)
I746100 (AIP sensor infrastructure - agrC + agrA with RBSes) + B0015 (Terminator)

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

AAR
BBa_K590032 Version 1 (Component)
Acyl-ACP Reductase (AAR) - Synechococcus elongatus PCC7942

BBa_K748000
BBa_K748000 Version 1 (Component)
AgrA protein coding sequence. AgrA is the main component of S.aureus agr quorum sensing system.

BBa_K748001
BBa_K748001 Version 1 (Component)
AgrC protein coding sequence. AgrC is main component of S.aureus agr quorum sensing system.

BBa_I746103
BBa_I746103 Version 1 (Component)
I746101 (AIP sensor infrastructure - agrC + agrA with RBSes + Terminator) + I746104 (Inducible P2)

BBa_K1351036
BBa_K1351036 Version 1 (Component)
Quorum sensing two component system (AIP-II sensing histidine kinase agrC, response regulator agrA)

BBa_I746008
BBa_I746008 Version 1 (Component)
I0500 (Inducible pBad/araC) + I746001 (AIP generator - agrB + agrD with RBSes + Terminator)

BBa_K1022119
BBa_K1022119 Version 1 (Component)
pBAD: RBS : agrC : RBS : agrA : TT : pP2

BBa_I746105
BBa_I746105 Version 1 (Component)
GFP with agr P2 promoter

BBa_K1150013
BBa_K1150013 Version 1 (Component)
AGS Linker

BBa_K359003
BBa_K359003 Version 1 (Component)
Agr P2 with RFP

BBa_K212003
BBa_K212003 Version 1 (Component)
pAgr (S. epidermidis agr operon promoter)

BBa_I746350
BBa_I746350 Version 1 (Component)
ogr activator from P2 phage

BBa_K359005
BBa_K359005 Version 1 (Component)
Senses AIP and has RFP reporter (from Agr quorum sensing system)

BBa_K1022121
BBa_K1022121 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: Signiferin: RBS TetR :TT

BBa_K1022120
BBa_K1022120 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: MaximinH5: RBS TetR :TT

BBa_K1022122
BBa_K1022122 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: Magainin II : RBS TetR :TT

BBa_K1369003
BBa_K1369003 Version 1 (Component)
AgrC+4xSH3 domain

BBa_K1369005
BBa_K1369005 Version 1 (Component)
AgrA; P2 promoter+GFP

AG4
BBa_M10023 Version 1 (Component)
{˂AG4˃} Silver binding peptide

BBa_K567012
BBa_K567012 Version 1 (Component)
tRNA(Asp)-AGG

BBa_K1369004
BBa_K1369004 Version 1 (Component)
AgrA+SH3 peptide; P2 promoter+GFP

BBa_I746009
BBa_I746009 Version 1 (Component)
AIP generator + outer membrane permeability

BBa_K1022129
BBa_K1022129 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: Magainin II:RBS TetR :TT : pTet: cI: TT : pcI: Ulp : Ly

BBa_K1022128
BBa_K1022128 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: Signiferin: RBS TetR :TT : pTet: cI: TT : pcI: Ulp : Ly

BBa_K1022127
BBa_K1022127 Version 1 (Component)
pBAD: Agr A : Agr C : pP2 : RBS: His6- SUMO: MaximinH5: RBS TetR :TT : pTet: cI: TT : pcI: Ulp : Lys

BBa_I712011
BBa_I712011 Version 1 (Component)
CUb (split ubiquitin system)

ADC-AAR
BBa_K590052 Version 1 (Component)
Aldehyde Decarbonylase to Acyl-ACP Reductase (ADC-AAR) Fusion

BBa_K359002
BBa_K359002 Version 1 (Component)
Agr quroum sensing sensor/generator, FepA pore, with P2 + reporter

BBa_K748008
BBa_K748008 Version 1 (Component)
P2 promoter. P2 promoter can be activated by phosphorylated AgrA.

BBa_K1061003
BBa_K1061003 Version 1 (Component)
RIP 3

GFP-AID
BBa_K812010 Version 1 (Component)
GFP fused with AID-tag (ubuquitinase E3 OsTirI recoginition domain)

BBa_K748009
BBa_K748009 Version 1 (Component)
P3 promoter. P3 can be activated by phosphorylated AgrA.

RIP
BBa_K237000 Version 1 (Component)
RIP - Quorum sensing inhibitor of Staphylococcus spp. (Including MRSA)

AAR-ADC
BBa_K590051 Version 1 (Component)
Acyl-ACP Reductase to Aldehyde Decarbonylase (AAR-ADC) Fusion

BBa_K1554001
BBa_K1554001 Version 1 (Component)
AtrΔ11