SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_I712019
BBa_I712019 Version 1 (Component)
Firefly luciferase - luciferase from Photinus pyralis

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K325209
BBa_K325209 Version 1 (Component)
Green Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

BBa_J10063
BBa_J10063 Version 1 (Component)
Green Firefly Luciferase and LRE L. Cruciata (E. coli optimised)

BBa_K325219
BBa_K325219 Version 1 (Component)
Red Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325259
BBa_K325259 Version 1 (Component)
Yellow Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325218
BBa_K325218 Version 1 (Component)
Orange Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325100
BBa_K325100 Version 1 (Component)
EPIC Firefly Luciferase and LRE <BR><i>P. Pyralis<BR>(E. coli optimised)</i>

HisTag
BBa_J18909 Version 1 (Component)
His tag (6xHis; E. coli - optimized)

BBa_K325229
BBa_K325229 Version 1 (Component)
Green Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325211
BBa_K325211 Version 1 (Component)
Orange Firefly Luciferase<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K654033
BBa_K654033 Version 1 (Component)
Firefly Luciferase + Terminator

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_J70029
BBa_J70029 Version 1 (Component)
RBS + mCherry gene, optimized for expression in Me. florum and E. coli

BBa_K325239
BBa_K325239 Version 1 (Component)
Red Firefly Luciferase and LRE (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325101
BBa_K325101 Version 1 (Component)
EPIC Firefly Luciferase <BR><i>Photinus Pyralis<BR>(E. coli optimised)</i>

BBa_K325249
BBa_K325249 Version 1 (Component)
Scarlet Firefly Luciferase (under pBAD)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K325108
BBa_K325108 Version 1 (Component)
EPIC Firefly Luciferase (under pBAD)<BR><i>P. Pyralis<BR>(E. coli optimised)</i>

cjBlue
BBa_K592011 Version 1 (Component)
cjBlue, green chromoprotein

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_K914003
BBa_K914003 Version 1 (Component)
L-rhamnose-inducible promoter (pRha)

BBa_K654042
BBa_K654042 Version 1 (Component)
E. coli 1.0 RBS + Firefly Luciferase + Terminator

BBa_K953004
BBa_K953004 Version 1 (Component)
Hemeoxygenase with RBS (E. coli Codon Optimised)

BBa_J95000
BBa_J95000 Version 1 (Component)
Firefly (photinus pyralis) luciferase

BBa_K325202
BBa_K325202 Version 1 (Component)
Luciferin Regenerating Enzyme (LRE)<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K731722
BBa_K731722 Version 1 (Component)
T1 terminator from E. coli rrnB

BBa_J33201
BBa_J33201 Version 1 (Component)
E. coli chromosomal ars promoter with arsR repressor gene

BBa_K953002
BBa_K953002 Version 1 (Component)
Agrobacterium tumefaciens Bacteriophytochrome with RBS (E. coli Codon Optimised)

BBa_M1716
BBa_M1716 Version 1 (Component)
Hepcidin Optimized for E. coli

Fluc
BBa_K1993018 Version 1 (Component)
Luciferase(Firefly Luciferase)

BBa_J52642
BBa_J52642 Version 1 (Component)
Green Flourescence Protein

BBa_K325200
BBa_K325200 Version 1 (Component)
Wild-type luciferase and LRE from L. cruciata with RBSs

Intein
BBa_K300004 Version 1 (Component)
Engineered pH-inducible intein (codon optimized for E. coli) - internal domain

BBa_K1343014
BBa_K1343014 Version 1 (Component)
Plux-green renilla luciferase

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from &#955; phage

BBa_I746200
BBa_I746200 Version 1 (Component)
FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.