iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_P10598BBa_P10598 Version 1 (Component)GoldenBraid destination vector omega insert
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1547008BBa_K1547008 Version 1 (Component)FAD3 for omega 3 fatty acid synthesis
BBa_K2066019BBa_K2066019 Version 1 (Component)UNS 3 Sequence, from Torella et al., 2013
Prm +BBa_I12007 Version 1 (Component)Modified lambda Prm promoter (OR-3 obliterated)
FurBO_11498 Version 1 (Component) FadABBa_K861400 Version 1 (Component)FadA protein coding sequence for fatty acid degradation
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K861030BBa_K861030 Version 1 (Component)FadB, gene for fatty acid degradation from E.coli K12
BBa_M11058BBa_M11058 Version 1 (Component)pfaA gene for omega-3 fatty acid synthesis
BBa_M11059BBa_M11059 Version 1 (Component)pfaB gene for omega-3 fatty acid synthesis
BBa_K861042BBa_K861042 Version 1 (Component)FadA, gene for fatty acid degradation from <i>Salmonella enterica</i> LT2
BBa_K861031BBa_K861031 Version 1 (Component)FadJ, gene for fatty acid degradation from <i>E.coli str. K12</i>
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
BBa_K1507003BBa_K1507003 Version 1 (Component)Fatty Acid Desaturase 6 (FAD6)
BBa_K861500BBa_K861500 Version 1 (Component)FadL, Long-chain fatty acids transporter from <i>E.coli str. K12</i>
BBa_M11062BBa_M11062 Version 1 (Component)pfaC gene for omega-3 polyunsaturated fatty acid synthase
BBa_M11060BBa_M11060 Version 1 (Component)pfaD omega-3 polyunsaturated fatty acid synthase
FadRBO_11470 Version 1 (Component) BBa_M11061BBa_M11061 Version 1 (Component)pfaD omega-3 polyunsaturated fatty acid synthase (mutated)
BBa_M11063BBa_M11063 Version 1 (Component)pfaE omega-3 polyunsaturated fatty acid synthase (mutated)
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K861041BBa_K861041 Version 1 (Component)FadI, gene for fatty acid degradation from <i>E.coli str. K12</i>
PfadRBBa_K861060 Version 1 (Component)PfadR, synthetic promoter with tandem FadR binding site
BBa_K309012BBa_K309012 Version 1 (Component)Unc-54 3' UTR (for use in C. elegans chassis)
BBa_K1076000BBa_K1076000 Version 1 (Component)fatty acid metabolism regulator protein FadR
BBa_K1507013BBa_K1507013 Version 1 (Component)Fatty acid induced expression auto regulator (J23119-B0034-FadR-B0015- J23119-B0034-FadL-B0015)
BBa_K861021BBa_K861021 Version 1 (Component)FadE gene for fatty acid degradation from <i>Salmonella enterica</i> LT2
BBa_K861050BBa_K861050 Version 1 (Component)FadR, fatty acid sensor from <i>E.coli str. K12</i>
BBa_J95029BBa_J95029 Version 1 (Component)omega terminator
BBa_K1076004BBa_K1076004 Version 1 (Component)FadD, Long-chain-fatty-acid-CoA ligase
BBa_K1076003BBa_K1076003 Version 1 (Component)FadD, Long-chain-fatty-acid-CoA ligase
BBa_K861032BBa_K861032 Version 1 (Component)S-FadB gene for fatty acid degradation from <i>Salmonella enterica</i> LT2
BBa_K1076002BBa_K1076002 Version 1 (Component)FadL, Long-chain fatty acid outer membrane transporte
BBa_K1076005BBa_K1076005 Version 1 (Component)FadL, Long-chain fatty acid outer membrane transporte
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL