SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K2066019BBa_K2066019 Version 1 (Component)UNS 3 Sequence, from Torella et al., 2013
BBa_K2066506BBa_K2066506 Version 1 (Component)RiboJ (Ribozyme Insulator) Lou et. al. 2012
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J119397BBa_J119397 Version 1 (Component)pJC173b gIII neg (Carlson et al. 2014)
BBa_J100265BBa_J100265 Version 1 (Component)pJC173b (Carlson et al. 2014)
BBa_J100266BBa_J100266 Version 1 (Component)pJC173g-SD8_AP-neg (Carlson et al. 2014)
BBa_J100267BBa_J100267 Version 1 (Component)pJC174c-R5 (Carlson et al. 2014)
BBa_K2066508BBa_K2066508 Version 1 (Component)Modified pLacO-1 Promoter (Lou et. al 2012)
BBa_K2066021BBa_K2066021 Version 1 (Component)UNS 5 Sequence, from Torella et al., 2013
BBa_K2066507BBa_K2066507 Version 1 (Component)UNS 6.1 (Torella et. al 2013)
BBa_K2066020BBa_K2066020 Version 1 (Component)UNS 4 Sequence, from Torella et al., 2013
BBa_K2066510BBa_K2066510 Version 1 (Component)Strong RBS from Lou et. al 2012
BBa_J100264BBa_J100264 Version 1 (Component)pJC156c2 (Carlson et al. 2014)
BBa_J100271BBa_J100271 Version 1 (Component)SP-T7WT (Carlson et al. 2014)
BBa_J100269BBa_J100269 Version 1 (Component)SP-T7Promiscuous_L1-192.2 (Carlson et al. 2014)
BBa_J100270BBa_J100270 Version 1 (Component)SP-T7Specific_L2-48.3 (Carlson et al. 2014)
BBa_J100288BBa_J100288 Version 1 (Component)pJC173b with gIII neg
BBa_J100263BBa_J100263 Version 1 (Component)RS10 (Wachsmuth et al. 2013) in J119361
BBa_K823003BBa_K823003 Version 1 (Component)P<sub>veg</sub>
cohmYFPBBa_E1030 Version 1 (Component)cohmYFP (July 2004)
BBa_B0070BBa_B0070 Version 1 (Component)Specialized RBS modified from that of B0036 (Brink et al.)
BBa_I750005BBa_I750005 Version 1 (Component)NpSopII-NpHtrII from J.Spudich et al
BBa_J100287BBa_J100287 Version 1 (Component)J100265 (pJC173b) with GFP replacing LuxAB
BBa_M31782BBa_M31782 Version 1 (Component)Gene VIII w/o Gene III Promoter
BBa_K737026BBa_K737026 Version 1 (Component)Promoter that can be induced by phosphate and carbon starvation.
BBa_M31784BBa_M31784 Version 1 (Component)Gene VIII w/o Gene III Promoter + w/ mCherry
PvegBBa_K143012 Version 1 (Component)Promoter veg a constitutive promoter for B. subtilis
BBa_M13508BBa_M13508 Version 1 (Component)M13K07 gene VIII RBS
BBa_K2066500BBa_K2066500 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_M13008BBa_M13008 Version 1 (Component)M13KO7 gene VIII
BBa_M13108BBa_M13108 Version 1 (Component)M13K07 gene VIII promoter
BBa_M31113BBa_M31113 Version 1 (Component)Part of Gene III, M13 phage, and terminator of gVIII.
BBa_K2036008BBa_K2036008 Version 1 (Component)RBS-CIII-RBS-CIII,tandem expression
VegBO_6827 Version 1 (Component) vegBO_30791 Version 1 (Component) Neg. ContrBBa_K115012 Version 1 (Component)Standard Luciferase Expression
BBa_K1333313BBa_K1333313 Version 1 (Component)PIII with an RNA thermometer(PrfA)
BBa_K1333318BBa_K1333318 Version 1 (Component)PIII with an RNA thermometer(Rose42)
YheEBO_2014 Version 1 (Component) BBa_M13503BBa_M13503 Version 1 (Component)M13K07 gene III RBS
neoBBa_K1442031 Version 1 (Component)Split Neomycin