Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_B0016BBa_B0016 Version 1 (Component)Terminator (T7 RNAP specific, T_Phi)
BBa_M50011BBa_M50011 Version 1 (Component)This is an E. coli specific sensor for hydrogen peroxide.
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
FurBO_11498 Version 1 (Component) HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_I746200BBa_I746200 Version 1 (Component)FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
PelBBBa_J32015 Version 1 (Component)PelB leader sequence; directs protein to E. coli periplasmic membrane
BBa_K731722BBa_K731722 Version 1 (Component)T1 terminator from E. coli rrnB
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K137076BBa_K137076 Version 1 (Component)AHL inducible production of hydrogen peroxide
preSCsiteBBa_J18919 Version 1 (Component)preScission protease cleavage site (E. coli-optimized)
BBa_M1716BBa_M1716 Version 1 (Component)Hepcidin Optimized for E. coli
fhlABBa_K778001 Version 1 (Component)fhlA: a transcriptional activator for enhanced hydrogen production
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
InteinBBa_K300004 Version 1 (Component)Engineered pH-inducible intein (codon optimized for E. coli) - internal domain
BBa_K362006BBa_K362006 Version 1 (Component)yaiA shows OxyR-dependent induction of expression by hydrogen peroxide.
BBa_K654058BBa_K654058 Version 1 (Component)Thioesterase (TesA from E. coli) with 8-His Tag
BBa_K912001BBa_K912001 Version 1 (Component)E. coli phytase (appa phytase)
sacBBBa_K322921 Version 1 (Component)B. subtilis levansucrase. Lethal to E. coli in presence of sucrose.
BBa_F1610BBa_F1610 Version 1 (Component)3OC<sub>6</sub>HSL Sender Device
BBa_K294000BBa_K294000 Version 1 (Component)This is the coding sequence for the heat shock protein hsp15 from E. coli
amyE 5 ISBBa_K143001 Version 1 (Component)5??? Integration Sequence for the amyE locus of B. subtilis
BBa_K863005BBa_K863005 Version 1 (Component)ecol laccase from E. coli with T7 promoter, RBS and His-tag
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
TEVsiteBBa_J18918 Version 1 (Component)TEV cleavage site (E. coli)
BBa_K1114300BBa_K1114300 Version 1 (Component)This is the MoClo formatted part of BBa_B0015.
BBa_K953004BBa_K953004 Version 1 (Component)Hemeoxygenase with RBS (E. coli Codon Optimised)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K1172901BBa_K1172901 Version 1 (Component)Alanine racemase from ''E. coli''
BBa_K863006BBa_K863006 Version 1 (Component)ecol laccase from E. coli
BBa_K415010BBa_K415010 Version 1 (Component)This is part K415006 with an appended Plux/cI promoter (R0065)
BBa_J70024BBa_J70024 Version 1 (Component)TetM gene, recoded compromise E. coli & Mesoplasma florum