Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_J119395
BBa_J119395 Version 1 (Component)
tClone Red containing the RS3 Riboswitch

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_J100209
BBa_J100209 Version 1 (Component)
tClone Red RS8

eforRed
BBa_K592012 Version 1 (Component)
eforRed, red chromoprotein

BBa_J119398
BBa_J119398 Version 1 (Component)
NiCo Riboswitch in tClone Red

BBa_J119402
BBa_J119402 Version 1 (Component)
Double NiCo Riboswitch in tClone Red

BBa_J119403
BBa_J119403 Version 1 (Component)
Triple NiCo Riboswitch in tClone Red

BBa_J100261
BBa_J100261 Version 1 (Component)
rClone Red with Riboswitch C

BBa_J100262
BBa_J100262 Version 1 (Component)
rClone Red with Riboswitch E

RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

BBa_K1212001
BBa_K1212001 Version 1 (Component)
Theophylline Riboswitch (Clone E)

BBa_K1212000
BBa_K1212000 Version 1 (Component)
Theophylline Riboswitch (Clone 8.1*)

BBa_J100208
BBa_J100208 Version 1 (Component)
tClone Red RS3shift

BBa_J119362
BBa_J119362 Version 1 (Component)
pClone Red pTac

BBa_K1520500
BBa_K1520500 Version 1 (Component)
red fluorescent protein

BBa_J100204
BBa_J100204 Version 1 (Component)
actClone Red

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_J100207
BBa_J100207 Version 1 (Component)
tClone Red RS3

BBa_J119361
BBa_J119361 Version 1 (Component)
tClone Red: Device for Testing Transciptional Terminators and Riboswitches via Golden Gate Assembly

BBa_K322124
BBa_K322124 Version 1 (Component)
Red light sensor Cph8 (from Coliroid) with RBS

BBa_J22106
BBa_J22106 Version 1 (Component)
rec A (SOS) Promoter

BBa_K902023
BBa_K902023 Version 1 (Component)
Moco Riboswitch

RS1
BBa_K743000 Version 1 (Component)
Synechocystis PCC6803 neutral recombination site.

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_J100223
BBa_J100223 Version 1 (Component)
Caffeine Aptamer with RS3, riboswitch in tCloneRed

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

BBa_J119384
BBa_J119384 Version 1 (Component)
rClone Red: Device for GGA Cloning and Testing RBS elements and Riboswitches

BBa_K784005
BBa_K784005 Version 1 (Component)
Theophylline riboswitch 12.1

Riboswitch
BBa_J04700 Version 1 (Component)
Part containing promoter, riboswitch mTCT8-4 theophylline aptamer (J04705), and RBS

Riboswitch
BBa_J04900 Version 1 (Component)
Part containing promoter, 8 bp, RBS, and riboswitch mTCT8-4 theophylline aptamer (J04705)

Riboswitch
BBa_J04800 Version 1 (Component)
J04800 (RevAptRibo) contains a theophylline aptamer upstream of the RBS that should act as a riboswi

BBa_K624004
BBa_K624004 Version 1 (Component)
ori+Pmsp1+rep (pYMB essentials)