SynBioHub

Public

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

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SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

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BBa_J100275
BBa_J100275 Version 1 (Component)
tCloneTet+PDB riboswitch with P9

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BBa_J100255
BBa_J100255 Version 1 (Component)
tCloneTet+PDB riboswitch

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BBa_J100276
BBa_J100276 Version 1 (Component)
tCLoneTet+PDB riboswitch with P4

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BBa_J100273
BBa_J100273 Version 1 (Component)
tCloneTet+PDB riboswitch with P2

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BBa_J100274
BBa_J100274 Version 1 (Component)
tCloneTet+PDB riboswitch with P14

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BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

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BBa_J119401
BBa_J119401 Version 1 (Component)
tCloneTet+PDB riboswitch with P5 and BD2

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BBa_J100277
BBa_J100277 Version 1 (Component)
tCloneTet+PDB riboswitch with P14 and BD10

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BBa_J119400
BBa_J119400 Version 1 (Component)
tCloneTet+PDB riboswitch with P5 and BD10

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BBa_J100279
BBa_J100279 Version 1 (Component)
tClone Tet+PDB riboswitch with P9 and BD10

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BBa_J100280
BBa_J100280 Version 1 (Component)
tClone Tet+PDB riboswitch with P9 and BD2

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BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

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BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

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BBa_K1321333
BBa_K1321333 Version 1 (Component)
pSB-AraC-pBAD

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BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

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BBa_J100221
BBa_J100221 Version 1 (Component)
Xanthine Aptamer from PDB with RS3, riboswitch in tCloneRed

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BBa_J100224
BBa_J100224 Version 1 (Component)
Theophylline Aptamer from PDB with RS3, riboswitch in tCloneRed

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BBa_J100219
BBa_J100219 Version 1 (Component)
tCloneTet with Riboswitch 8

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BBa_J100217
BBa_J100217 Version 1 (Component)
tCloneTet with Riboswitch 3

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BBa_J100216
BBa_J100216 Version 1 (Component)
tCloneTet with Riboswitch 10shift

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BBa_J100220
BBa_J100220 Version 1 (Component)
tCloneTet with Riboswitch 4

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BBa_J100218
BBa_J100218 Version 1 (Component)
tCloneTet with Riboswitch 3shift

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BBa_K228000
BBa_K228000 Version 1 (Component)
T7ptag(T7polymerase with amber mutation)

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_K2066527
BBa_K2066527 Version 1 (Component)
B0034 with scar TACTAG

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BBa_J119032
BBa_J119032 Version 1 (Component)
P9 Promoter - Low efficiency

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BBa_J100210
BBa_J100210 Version 1 (Component)
tCloneRed with RS4 Transcriptional Riboswitch

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BBa_J119396
BBa_J119396 Version 1 (Component)
SacB + PDB riboswitch

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BBa_J100215
BBa_J100215 Version 1 (Component)
tCloneTet+Red fusion protein reporter with Riboswitch 4

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BBa_J100212
BBa_J100212 Version 1 (Component)
tCloneTet+Red fusion protein reporter with Riboswitch 3

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BBa_J100213
BBa_J100213 Version 1 (Component)
tCloneTet+Red fusion protein reporter with Riboswitch 3Shift

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BBa_J100214
BBa_J100214 Version 1 (Component)
tCloneTet+Red fusion protein reporter with Riboswitch 10Shift

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BBa_K1051006
BBa_K1051006 Version 1 (Component)
Saccharomycescerevisiae TBY-1 terminator with stopcodon

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BBa_J100278
BBa_J100278 Version 1 (Component)
tCLone Tet+PDB riboswitch with P14 and BD2

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BBa_J100223
BBa_J100223 Version 1 (Component)
Caffeine Aptamer with RS3, riboswitch in tCloneRed

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BBa_J100252
BBa_J100252 Version 1 (Component)
tCloneTet with RS10shift

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BBa_K902023
BBa_K902023 Version 1 (Component)
Moco Riboswitch

Public

RBS_cassette
RBS_cassette Version 1 (Component)
AvrII restriction site (cctagg), overlapped with RBS (aggagga)

Public

pdc
BBa_K273000 Version 1 (Component)
Pyruvate decarboxylase (pdc) from <i>Z. Mobilis</i> ATCC 29191

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BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

Public

BBa_J100222
BBa_J100222 Version 1 (Component)
Xanthine Aptamer from riboCalc with RS3, riboswitch in tCloneRed

Public

BBa_K784005
BBa_K784005 Version 1 (Component)
Theophylline riboswitch 12.1

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